Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm45456-201ENSMUST00000210841 243 ntBASIC3.2□□□□□ -1.9
Trim56Q80VI1 Mir340-201ENSMUST00000083483 98 ntBASIC3.2□□□□□ -1.9
Trim56Q80VI1 Olfr1107-202ENSMUST00000214049 4388 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
Trim56Q80VI1 Vmn1r28-201ENSMUST00000226813 10877 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
Trim56Q80VI1 Vmn1r28-202ENSMUST00000227805 10892 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
Trim56Q80VI1 AC154515.1-201ENSMUST00000226085 2841 ntBASIC3.2□□□□□ -1.9
Trim56Q80VI1 Gm37566-201ENSMUST00000192363 4355 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 AC164164.1-201ENSMUST00000223245 2340 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 AC125374.3-201ENSMUST00000214983 2810 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 Gm25938-201ENSMUST00000104139 166 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 Gm23588-201ENSMUST00000157659 99 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 Gm24691-201ENSMUST00000157762 140 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 Gm23080-201ENSMUST00000157846 103 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 Gm23858-201ENSMUST00000158384 106 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 Gm24510-201ENSMUST00000174965 94 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 Gm24573-201ENSMUST00000175499 112 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 Gm25470-201ENSMUST00000175576 111 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 AC122465.2-201ENSMUST00000221774 354 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 AC124739.2-201ENSMUST00000222201 109 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 AC159188.1-201ENSMUST00000225198 526 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 Gm24615-201ENSMUST00000083268 113 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 Mir124a-3-201ENSMUST00000083520 68 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 Olfr801-203ENSMUST00000213294 4045 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
Trim56Q80VI1 Gm38211-201ENSMUST00000192814 7217 ntBASIC3.19□□□□□ -1.9
Trim56Q80VI1 Gm36669-201ENSMUST00000201757 3650 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
Trim56Q80VI1 Zfp788-207ENSMUST00000170770 2499 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
Trim56Q80VI1 Slc16a7-206ENSMUST00000211781 10981 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
Trim56Q80VI1 Olfr1132-202ENSMUST00000216082 3260 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
Trim56Q80VI1 Gm26247-201ENSMUST00000116702 91 ntBASIC3.18□□□□□ -1.9
Trim56Q80VI1 Gm11414-201ENSMUST00000121795 263 ntBASIC3.18□□□□□ -1.9
Trim56Q80VI1 Gm24291-201ENSMUST00000157633 162 ntBASIC3.18□□□□□ -1.9
Trim56Q80VI1 Gm23409-201ENSMUST00000158516 237 ntBASIC3.18□□□□□ -1.9
Trim56Q80VI1 Gm23268-201ENSMUST00000175494 78 ntBASIC3.18□□□□□ -1.9
Trim56Q80VI1 Gm28076-201ENSMUST00000188337 410 ntTSL 3 BASIC3.18□□□□□ -1.9
Trim56Q80VI1 Gm44482-201ENSMUST00000199232 103 ntBASIC3.18□□□□□ -1.9
Trim56Q80VI1 Zbtb37-203ENSMUST00000162226 18814 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
Trim56Q80VI1 Slain1os-201ENSMUST00000160117 3101 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
Trim56Q80VI1 Wnk3-201ENSMUST00000096285 8551 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
Trim56Q80VI1 Olfr509-203ENSMUST00000214861 3535 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
Trim56Q80VI1 Vmn1r172-202ENSMUST00000173101 9109 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Trim56Q80VI1 Nlrp9c-202ENSMUST00000085944 3216 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Trim56Q80VI1 Olfr576-201ENSMUST00000098213 3132 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
Trim56Q80VI1 Ighv9-3-201ENSMUST00000103473 351 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
Trim56Q80VI1 Gm23015-201ENSMUST00000104145 128 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 Gm11334-201ENSMUST00000121969 156 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 Gm22651-201ENSMUST00000157872 94 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 Gm24736-201ENSMUST00000158862 130 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 Snord53-201ENSMUST00000175146 78 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 Gm24813-201ENSMUST00000175310 84 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 Gm27532-201ENSMUST00000183726 113 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 Gm27786-201ENSMUST00000184337 70 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 Gm28169-201ENSMUST00000190342 345 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 1700109G14Rik-203ENSMUST00000190737 801 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Trim56Q80VI1 B230207O21Rik-201ENSMUST00000198634 321 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 AC125167.1-201ENSMUST00000198698 141 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 CAAA01090905.1-201ENSMUST00000219056 426 ntTSL 2 BASIC3.17□□□□□ -1.9
Trim56Q80VI1 AC129202.2-201ENSMUST00000225123 177 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 Gm23264-201ENSMUST00000083372 107 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 Gm24449-201ENSMUST00000083985 106 ntBASIC3.17□□□□□ -1.9
Trim56Q80VI1 Olfr1256-203ENSMUST00000213833 6081 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
Trim56Q80VI1 Ifi214-203ENSMUST00000139092 2888 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Trim56Q80VI1 Olfr1208-202ENSMUST00000214121 2823 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
Trim56Q80VI1 Olfr58-202ENSMUST00000215112 2454 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
Trim56Q80VI1 Traj43-201ENSMUST00000103699 57 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
Trim56Q80VI1 Gm22658-201ENSMUST00000104196 155 ntBASIC3.16□□□□□ -1.9
Trim56Q80VI1 Gm12513-201ENSMUST00000118617 352 ntBASIC3.16□□□□□ -1.9
Trim56Q80VI1 Gm24082-201ENSMUST00000175175 83 ntBASIC3.16□□□□□ -1.9
Trim56Q80VI1 Gm29613-201ENSMUST00000185846 313 ntBASIC3.16□□□□□ -1.9
Trim56Q80VI1 Gm29544-201ENSMUST00000188860 313 ntBASIC3.16□□□□□ -1.9
Trim56Q80VI1 Gm28808-201ENSMUST00000190978 313 ntBASIC3.16□□□□□ -1.9
Trim56Q80VI1 Gm42855-201ENSMUST00000197388 253 ntBASIC3.16□□□□□ -1.9
Trim56Q80VI1 Zfp616-205ENSMUST00000178159 2964 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
Trim56Q80VI1 Adgrg4-204ENSMUST00000153784 9329 ntAPPRIS P5 TSL 5 BASIC3.16□□□□□ -1.9
Trim56Q80VI1 Naaladl2-202ENSMUST00000203414 9330 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
Trim56Q80VI1 Gm24068-201ENSMUST00000104513 132 ntBASIC3.15□□□□□ -1.91
Trim56Q80VI1 Gm22612-201ENSMUST00000158293 101 ntBASIC3.15□□□□□ -1.91
Trim56Q80VI1 Igkv2-93-1-201ENSMUST00000196774 272 ntBASIC3.15□□□□□ -1.91
Trim56Q80VI1 Trav5-2-201ENSMUST00000199855 280 ntBASIC3.15□□□□□ -1.91
Trim56Q80VI1 AC159885.1-201ENSMUST00000222221 199 ntBASIC3.15□□□□□ -1.91
Trim56Q80VI1 AC149294.9-201ENSMUST00000227256 164 ntBASIC3.15□□□□□ -1.91
Trim56Q80VI1 Gm24461-201ENSMUST00000082735 103 ntBASIC3.15□□□□□ -1.91
Trim56Q80VI1 Mgat4c-211ENSMUST00000163753 3862 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.91
Trim56Q80VI1 Olfr498-201ENSMUST00000217616 2260 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
Trim56Q80VI1 Gm22105-201ENSMUST00000116734 116 ntBASIC3.14□□□□□ -1.91
Trim56Q80VI1 Gm9009-201ENSMUST00000117321 326 ntBASIC3.14□□□□□ -1.91
Trim56Q80VI1 Gm25270-201ENSMUST00000122606 138 ntBASIC3.14□□□□□ -1.91
Trim56Q80VI1 Gm27934-201ENSMUST00000158795 63 ntBASIC3.14□□□□□ -1.91
Trim56Q80VI1 Gm24926-201ENSMUST00000178053 79 ntBASIC3.14□□□□□ -1.91
Trim56Q80VI1 Gm22632-201ENSMUST00000178266 79 ntBASIC3.14□□□□□ -1.91
Trim56Q80VI1 Gm5224-201ENSMUST00000183060 350 ntBASIC3.14□□□□□ -1.91
Trim56Q80VI1 Mir7050-201ENSMUST00000184636 60 ntBASIC3.14□□□□□ -1.91
Trim56Q80VI1 Gm18546-201ENSMUST00000197245 676 ntBASIC3.14□□□□□ -1.91
Trim56Q80VI1 Vmn1r211-202ENSMUST00000228645 5447 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
Trim56Q80VI1 Gm13479-201ENSMUST00000130773 4722 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
Trim56Q80VI1 Rps15a-ps6-201ENSMUST00000117476 393 ntBASIC3.13□□□□□ -1.91
Trim56Q80VI1 Gm22011-201ENSMUST00000158790 123 ntBASIC3.13□□□□□ -1.91
Trim56Q80VI1 Gm21064-202ENSMUST00000190583 278 ntBASIC3.13□□□□□ -1.91
Trim56Q80VI1 Ttn-225ENSMUST00000190813 300 ntTSL 5 BASIC3.13□□□□□ -1.91
Trim56Q80VI1 Gm44326-201ENSMUST00000198226 101 ntBASIC3.13□□□□□ -1.91
Trim56Q80VI1 Gm25124-201ENSMUST00000083345 164 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 76,532 protein–RNA pairs in 155.1 ms