Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Cxcl12P40224 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Cxcl12P40224 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Cxcl12P40224 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
Cxcl12P40224 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Cxcl12P40224 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
Cxcl12P40224 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
Cxcl12P40224 Gm2415-204ENSMUST00000190235 2004 ntBASIC25.5■■□□□ 1.67
Cxcl12P40224 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Cxcl12P40224 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Cxcl12P40224 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Cxcl12P40224 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Cxcl12P40224 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC25.49■■□□□ 1.67
Cxcl12P40224 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
Cxcl12P40224 Gm9806-201ENSMUST00000051080 552 ntBASIC25.48■■□□□ 1.67
Cxcl12P40224 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Cxcl12P40224 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Cxcl12P40224 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC25.47■■□□□ 1.67
Cxcl12P40224 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Cxcl12P40224 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Cxcl12P40224 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Cxcl12P40224 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Cxcl12P40224 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC25.45■■□□□ 1.66
Cxcl12P40224 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC25.44■■□□□ 1.66
Cxcl12P40224 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Cxcl12P40224 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Cxcl12P40224 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Cxcl12P40224 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
Cxcl12P40224 Gm16437-201ENSMUST00000025669 507 ntBASIC25.42■■□□□ 1.66
Cxcl12P40224 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Cxcl12P40224 Gm4799-201ENSMUST00000095396 657 ntBASIC25.42■■□□□ 1.66
Cxcl12P40224 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC25.41■■□□□ 1.66
Cxcl12P40224 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Cxcl12P40224 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Cxcl12P40224 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Cxcl12P40224 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC25.39■■□□□ 1.66
Cxcl12P40224 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Cxcl12P40224 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Cxcl12P40224 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Cxcl12P40224 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
Cxcl12P40224 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC25.38■■□□□ 1.65
Cxcl12P40224 Gm30023-201ENSMUST00000197970 889 ntBASIC25.38■■□□□ 1.65
Cxcl12P40224 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Cxcl12P40224 Gm15039-201ENSMUST00000118914 875 ntBASIC25.37■■□□□ 1.65
Cxcl12P40224 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Cxcl12P40224 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Cxcl12P40224 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC25.34■■□□□ 1.65
Cxcl12P40224 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC25.33■■□□□ 1.65
Cxcl12P40224 Gm7332-201ENSMUST00000118351 454 ntBASIC25.33■■□□□ 1.65
Cxcl12P40224 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC25.33■■□□□ 1.65
Cxcl12P40224 Gm6658-202ENSMUST00000209493 1885 ntBASIC25.33■■□□□ 1.65
Cxcl12P40224 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Cxcl12P40224 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC25.32■■□□□ 1.64
Cxcl12P40224 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Cxcl12P40224 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Cxcl12P40224 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Cxcl12P40224 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Cxcl12P40224 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC25.31■■□□□ 1.64
Cxcl12P40224 Pkd1-207ENSMUST00000228550 1050 ntBASIC25.31■■□□□ 1.64
Cxcl12P40224 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Cxcl12P40224 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Cxcl12P40224 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC25.3■■□□□ 1.64
Cxcl12P40224 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Cxcl12P40224 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Cxcl12P40224 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Cxcl12P40224 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC25.28■■□□□ 1.64
Cxcl12P40224 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Cxcl12P40224 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Cxcl12P40224 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Cxcl12P40224 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC25.26■■□□□ 1.63
Cxcl12P40224 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
Cxcl12P40224 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Cxcl12P40224 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Cxcl12P40224 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
Cxcl12P40224 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Cxcl12P40224 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC25.23■■□□□ 1.63
Cxcl12P40224 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Cxcl12P40224 AC154454.1-201ENSMUST00000225253 216 ntBASIC25.22■■□□□ 1.63
Cxcl12P40224 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
Cxcl12P40224 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Cxcl12P40224 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
Cxcl12P40224 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC25.2■■□□□ 1.62
Cxcl12P40224 Gm27502-201ENSMUST00000183495 199 ntBASIC25.2■■□□□ 1.62
Cxcl12P40224 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
Cxcl12P40224 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Cxcl12P40224 Pcf11-205ENSMUST00000208255 1720 ntBASIC25.18■■□□□ 1.62
Cxcl12P40224 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Cxcl12P40224 Mir3960-201ENSMUST00000198213 73 ntBASIC25.18■■□□□ 1.62
Cxcl12P40224 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
Cxcl12P40224 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Cxcl12P40224 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC25.16■■□□□ 1.62
Cxcl12P40224 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Cxcl12P40224 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Cxcl12P40224 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
Cxcl12P40224 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Cxcl12P40224 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Cxcl12P40224 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Cxcl12P40224 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
Cxcl12P40224 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Cxcl12P40224 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms