Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv3A0A0A6YYE2 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv3A0A0A6YYE2 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv3A0A0A6YYE2 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv3A0A0A6YYE2 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv3A0A0A6YYE2 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv3A0A0A6YYE2 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv3A0A0A6YYE2 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trbv3A0A0A6YYE2 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trbv3A0A0A6YYE2 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv3A0A0A6YYE2 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv3A0A0A6YYE2 Gm27322-201ENSMUST00000184007 104 ntBASIC18.39■□□□□ 0.53
Trbv3A0A0A6YYE2 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv3A0A0A6YYE2 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC18.39■□□□□ 0.53
Trbv3A0A0A6YYE2 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv3A0A0A6YYE2 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Trbv3A0A0A6YYE2 Gm25262-201ENSMUST00000174934 133 ntBASIC18.37■□□□□ 0.53
Trbv3A0A0A6YYE2 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Trbv3A0A0A6YYE2 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv3A0A0A6YYE2 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv3A0A0A6YYE2 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Trbv3A0A0A6YYE2 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Trbv3A0A0A6YYE2 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Trbv3A0A0A6YYE2 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv3A0A0A6YYE2 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv3A0A0A6YYE2 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv3A0A0A6YYE2 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv3A0A0A6YYE2 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv3A0A0A6YYE2 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trbv3A0A0A6YYE2 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv3A0A0A6YYE2 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv3A0A0A6YYE2 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trbv3A0A0A6YYE2 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trbv3A0A0A6YYE2 Gm17082-201ENSMUST00000166043 1091 ntBASIC18.33■□□□□ 0.52
Trbv3A0A0A6YYE2 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv3A0A0A6YYE2 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv3A0A0A6YYE2 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC18.33■□□□□ 0.52
Trbv3A0A0A6YYE2 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv3A0A0A6YYE2 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv3A0A0A6YYE2 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv3A0A0A6YYE2 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.32■□□□□ 0.52
Trbv3A0A0A6YYE2 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv3A0A0A6YYE2 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv3A0A0A6YYE2 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv3A0A0A6YYE2 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trbv3A0A0A6YYE2 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv3A0A0A6YYE2 Peli2-204ENSMUST00000226513 1320 ntBASIC18.3■□□□□ 0.52
Trbv3A0A0A6YYE2 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv3A0A0A6YYE2 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv3A0A0A6YYE2 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv3A0A0A6YYE2 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv3A0A0A6YYE2 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Trbv3A0A0A6YYE2 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv3A0A0A6YYE2 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv3A0A0A6YYE2 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv3A0A0A6YYE2 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC18.27■□□□□ 0.51
Trbv3A0A0A6YYE2 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Trbv3A0A0A6YYE2 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Trbv3A0A0A6YYE2 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Trbv3A0A0A6YYE2 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv3A0A0A6YYE2 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Trbv3A0A0A6YYE2 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.26■□□□□ 0.51
Trbv3A0A0A6YYE2 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv3A0A0A6YYE2 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv3A0A0A6YYE2 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv3A0A0A6YYE2 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Trbv3A0A0A6YYE2 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
Trbv3A0A0A6YYE2 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
Trbv3A0A0A6YYE2 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv3A0A0A6YYE2 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trbv3A0A0A6YYE2 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv3A0A0A6YYE2 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv3A0A0A6YYE2 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv3A0A0A6YYE2 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv3A0A0A6YYE2 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv3A0A0A6YYE2 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv3A0A0A6YYE2 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv3A0A0A6YYE2 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv3A0A0A6YYE2 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv3A0A0A6YYE2 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv3A0A0A6YYE2 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv3A0A0A6YYE2 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trbv3A0A0A6YYE2 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trbv3A0A0A6YYE2 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trbv3A0A0A6YYE2 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
Trbv3A0A0A6YYE2 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trbv3A0A0A6YYE2 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trbv3A0A0A6YYE2 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trbv3A0A0A6YYE2 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trbv3A0A0A6YYE2 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trbv3A0A0A6YYE2 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trbv3A0A0A6YYE2 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trbv3A0A0A6YYE2 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trbv3A0A0A6YYE2 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trbv3A0A0A6YYE2 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Trbv3A0A0A6YYE2 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trbv3A0A0A6YYE2 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC18.18■□□□□ 0.5
Trbv3A0A0A6YYE2 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv3A0A0A6YYE2 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv3A0A0A6YYE2 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms