Protein–RNA interactions for Protein: P0CH08

RPL40A, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40AP0CH08 snR128snR128 126 nt-0.31□□□□□ -2.46
RPL40AP0CH08 YJR141WYJR141W 1044 nt-0.32□□□□□ -2.46
RPL40AP0CH08 YHL041WYHL041W 450 nt-0.33□□□□□ -2.46
RPL40AP0CH08 RPF1YHR088W 888 nt-0.33□□□□□ -2.46
RPL40AP0CH08 YJL020W-AYJL020W-A 258 nt-0.33□□□□□ -2.46
RPL40AP0CH08 YOR011W-AYOR011W-A 207 nt-0.33□□□□□ -2.46
RPL40AP0CH08 YCR018C-AYCR018C-A 255 nt-0.34□□□□□ -2.46
RPL40AP0CH08 YCR038W-AYCR038W-A 126 nt-0.34□□□□□ -2.46
RPL40AP0CH08 tN(GUU)QtN(GUU)Q 71 nt-0.34□□□□□ -2.46
RPL40AP0CH08 SBH2YER019C-A 267 nt-0.35□□□□□ -2.47
RPL40AP0CH08 YFR009W-AYFR009W-A 258 nt-0.35□□□□□ -2.47
RPL40AP0CH08 SOV1YMR066W 2697 nt-0.35□□□□□ -2.47
RPL40AP0CH08 COY1YKL179C 2040 nt-0.36□□□□□ -2.47
RPL40AP0CH08 YHR131W-AYHR131W-A 246 nt-0.36□□□□□ -2.47
RPL40AP0CH08 YDL011CYDL011C 324 nt-0.37□□□□□ -2.47
RPL40AP0CH08 YLL006W-AYLL006W-A 177 nt-0.37□□□□□ -2.47
RPL40AP0CH08 YMR307C-AYMR307C-A 195 nt-0.37□□□□□ -2.47
RPL40AP0CH08 SGF11YPL047W 300 nt-0.37□□□□□ -2.47
RPL40AP0CH08 GRX5YPL059W 453 nt-0.37□□□□□ -2.47
RPL40AP0CH08 YPL229WYPL229W 621 nt-0.37□□□□□ -2.47
RPL40AP0CH08 YNL319WYNL319W 441 nt-0.38□□□□□ -2.47
RPL40AP0CH08 YBL071CYBL071C 309 nt-0.39□□□□□ -2.47
RPL40AP0CH08 SEC10YLR166C 2616 nt-0.39□□□□□ -2.47
RPL40AP0CH08 HMRA2YCR096C 360 nt-0.4□□□□□ -2.47
RPL40AP0CH08 YDL185C-AYDL185C-A 228 nt-0.4□□□□□ -2.47
RPL40AP0CH08 SEM1YDR363W-A 270 nt-0.4□□□□□ -2.47
RPL40AP0CH08 YLR101CYLR101C 396 nt-0.4□□□□□ -2.47
RPL40AP0CH08 YLR269CYLR269C 351 nt-0.41□□□□□ -2.48
RPL40AP0CH08 YLR287CYLR287C 1068 nt-0.41□□□□□ -2.48
RPL40AP0CH08 YKL083WYKL083W 615 nt-0.42□□□□□ -2.48
RPL40AP0CH08 COG6YNL041C 2520 nt-0.43□□□□□ -2.48
RPL40AP0CH08 YEL073CYEL073C 324 nt-0.43□□□□□ -2.48
RPL40AP0CH08 YPR002C-AYPR002C-A 198 nt-0.43□□□□□ -2.48
RPL40AP0CH08 TAR1YLR154W-C 375 nt-0.44□□□□□ -2.48
RPL40AP0CH08 ECL1YGR146C 636 nt-0.45□□□□□ -2.48
RPL40AP0CH08 YML007C-AYML007C-A 111 nt-0.45□□□□□ -2.48
RPL40AP0CH08 GPI15YNL038W 690 nt-0.45□□□□□ -2.48
RPL40AP0CH08 YJL047C-AYJL047C-A 135 nt-0.46□□□□□ -2.48
RPL40AP0CH08 ZEO1YOL109W 342 nt-0.46□□□□□ -2.48
RPL40AP0CH08 DIE2YGR227W 1578 nt-0.46□□□□□ -2.48
RPL40AP0CH08 HTB2YBL002W 396 nt-0.47□□□□□ -2.48
RPL40AP0CH08 RAD61YDR014W 1944 nt-0.47□□□□□ -2.48
RPL40AP0CH08 YDR426CYDR426C 378 nt-0.48□□□□□ -2.49
RPL40AP0CH08 YGR174W-AYGR174W-A 87 nt-0.48□□□□□ -2.49
RPL40AP0CH08 YPR092WYPR092W 306 nt-0.48□□□□□ -2.49
RPL40AP0CH08 YNL303WYNL303W 348 nt-0.49□□□□□ -2.49
RPL40AP0CH08 FYV7YLR068W 456 nt-0.5□□□□□ -2.49
RPL40AP0CH08 YCR022CYCR022C 345 nt-0.51□□□□□ -2.49
RPL40AP0CH08 YLR282CYLR282C 342 nt-0.51□□□□□ -2.49
RPL40AP0CH08 YLR285C-AYLR285C-A 171 nt-0.51□□□□□ -2.49
RPL40AP0CH08 YPL068CYPL068C 882 nt-0.51□□□□□ -2.49
RPL40AP0CH08 URB1YKL014C 5295 nt-0.52□□□□□ -2.49
RPL40AP0CH08 YHR007C-AYHR007C-A 216 nt-0.52□□□□□ -2.49
RPL40AP0CH08 YAR047CYAR047C 321 nt-0.52□□□□□ -2.49
RPL40AP0CH08 RPS25BYLR333C 327 nt-0.52□□□□□ -2.49
RPL40AP0CH08 YPL205CYPL205C 345 nt-0.52□□□□□ -2.49
RPL40AP0CH08 PCF11YDR228C 1881 nt-0.52□□□□□ -2.49
RPL40AP0CH08 YIR030W-AYIR030W-A 384 nt-0.53□□□□□ -2.49
RPL40AP0CH08 YLR334CYLR334C 381 nt-0.54□□□□□ -2.5
RPL40AP0CH08 YHR125WYHR125W 306 nt-0.55□□□□□ -2.5
RPL40AP0CH08 PCC1YKR095W-A 267 nt-0.55□□□□□ -2.5
RPL40AP0CH08 YOR192C-CYOR192C-C 237 nt-0.56□□□□□ -2.5
RPL40AP0CH08 Q0255Q0255 1419 nt-0.56□□□□□ -2.5
RPL40AP0CH08 YHR138CYHR138C 345 nt-0.59□□□□□ -2.5
RPL40AP0CH08 YJL120WYJL120W 324 nt-0.59□□□□□ -2.5
RPL40AP0CH08 SNU13YEL026W 381 nt-0.6□□□□□ -2.51
RPL40AP0CH08 EAF6YJR082C 342 nt-0.6□□□□□ -2.51
RPL40AP0CH08 tT(UGU)G1tT(UGU)G1 72 nt-0.61□□□□□ -2.51
RPL40AP0CH08 tT(UGU)G2tT(UGU)G2 72 nt-0.61□□□□□ -2.51
RPL40AP0CH08 tT(UGU)PtT(UGU)P 72 nt-0.61□□□□□ -2.51
RPL40AP0CH08 YLR456WYLR456W 615 nt-0.61□□□□□ -2.51
RPL40AP0CH08 YBR072C-AYBR072C-A 162 nt-0.61□□□□□ -2.51
RPL40AP0CH08 YBR099CYBR099C 384 nt-0.61□□□□□ -2.51
RPL40AP0CH08 AIM29YKR074W 468 nt-0.62□□□□□ -2.51
RPL40AP0CH08 YMR158W-BYMR158W-B 321 nt-0.62□□□□□ -2.51
RPL40AP0CH08 YDR354C-AYDR354C-A 144 nt-0.63□□□□□ -2.51
RPL40AP0CH08 YER084W-AYER084W-A 513 nt-0.63□□□□□ -2.51
RPL40AP0CH08 CBS1YDL069C 690 nt-0.64□□□□□ -2.51
RPL40AP0CH08 YDR366CYDR366C 399 nt-0.64□□□□□ -2.51
RPL40AP0CH08 BLI1YKL061W 342 nt-0.64□□□□□ -2.51
RPL40AP0CH08 snR161snR161 161 nt-0.64□□□□□ -2.51
RPL40AP0CH08 YBR223W-AYBR223W-A 120 nt-0.64□□□□□ -2.51
RPL40AP0CH08 EST1YLR233C 2100 nt-0.65□□□□□ -2.51
RPL40AP0CH08 YOR161W-AYOR161W-A 81 nt-0.65□□□□□ -2.51
RPL40AP0CH08 YFL012WYFL012W 447 nt-0.67□□□□□ -2.52
RPL40AP0CH08 YGL123C-AYGL123C-A 231 nt-0.67□□□□□ -2.52
RPL40AP0CH08 YHR130CYHR130C 336 nt-0.67□□□□□ -2.52
RPL40AP0CH08 YKL100W-AYKL100W-A 90 nt-0.68□□□□□ -2.52
RPL40AP0CH08 snR54snR54 86 nt-0.68□□□□□ -2.52
RPL40AP0CH08 RPM2YML091C 3609 nt-0.69□□□□□ -2.52
RPL40AP0CH08 YKL123WYKL123W 381 nt-0.69□□□□□ -2.52
RPL40AP0CH08 YLR041WYLR041W 321 nt-0.69□□□□□ -2.52
RPL40AP0CH08 YIL071W-AYIL071W-A 477 nt-0.7□□□□□ -2.52
RPL40AP0CH08 snR36snR36 182 nt-0.7□□□□□ -2.52
RPL40AP0CH08 YAR029WYAR029W 225 nt-0.72□□□□□ -2.52
RPL40AP0CH08 YEL020C-BYEL020C-B 198 nt-0.74□□□□□ -2.53
RPL40AP0CH08 YER006C-AYER006C-A 318 nt-0.75□□□□□ -2.53
RPL40AP0CH08 BI2Q0110 1272 nt-0.76□□□□□ -2.53
RPL40AP0CH08 AGA2YGL032C 264 nt-0.76□□□□□ -2.53
RPL40AP0CH08 PRM3YPL192C 402 nt-0.77□□□□□ -2.53
Retrieved 100 of 7,029 protein–RNA pairs in 31.1 ms