Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC40.14■■■■■ 4.02
Col17a1Q07563 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC40.12■■■■■ 4.01
Col17a1Q07563 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC40.12■■■■■ 4.01
Col17a1Q07563 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC40.12■■■■■ 4.01
Col17a1Q07563 Gm5812-201ENSMUST00000061073 957 ntBASIC40.12■■■■■ 4.01
Col17a1Q07563 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC40.12■■■■■ 4.01
Col17a1Q07563 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC40.08■■■■■ 4.01
Col17a1Q07563 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC40.08■■■■■ 4.01
Col17a1Q07563 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC40.07■■■■■ 4
Col17a1Q07563 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC40.05■■■■■ 4
Col17a1Q07563 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC40.04■■■■■ 4
Col17a1Q07563 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC40.04■■■■■ 4
Col17a1Q07563 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC40.03■■■■■ 4
Col17a1Q07563 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC40.01■■■■■ 4
Col17a1Q07563 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC39.99■■■■□ 3.99
Col17a1Q07563 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC39.98■■■■□ 3.99
Col17a1Q07563 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC39.97■■■■□ 3.99
Col17a1Q07563 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC39.96■■■■□ 3.99
Col17a1Q07563 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC39.95■■■■□ 3.99
Col17a1Q07563 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC39.95■■■■□ 3.99
Col17a1Q07563 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC39.94■■■■□ 3.98
Col17a1Q07563 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC39.94■■■■□ 3.98
Col17a1Q07563 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC39.93■■■■□ 3.98
Col17a1Q07563 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC39.92■■■■□ 3.98
Col17a1Q07563 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC39.92■■■■□ 3.98
Col17a1Q07563 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC39.91■■■■□ 3.98
Col17a1Q07563 Gm4799-201ENSMUST00000095396 657 ntBASIC39.91■■■■□ 3.98
Col17a1Q07563 Gm6345-201ENSMUST00000180378 1691 ntBASIC39.9■■■■□ 3.98
Col17a1Q07563 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC39.89■■■■□ 3.98
Col17a1Q07563 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC39.88■■■■□ 3.98
Col17a1Q07563 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC39.88■■■■□ 3.97
Col17a1Q07563 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC39.88■■■■□ 3.97
Col17a1Q07563 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC39.86■■■■□ 3.97
Col17a1Q07563 Gm7332-201ENSMUST00000118351 454 ntBASIC39.86■■■■□ 3.97
Col17a1Q07563 Scarna2-201ENSMUST00000157560 414 ntBASIC39.86■■■■□ 3.97
Col17a1Q07563 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC39.85■■■■□ 3.97
Col17a1Q07563 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC39.85■■■■□ 3.97
Col17a1Q07563 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC39.84■■■■□ 3.97
Col17a1Q07563 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC39.84■■■■□ 3.97
Col17a1Q07563 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC39.84■■■■□ 3.97
Col17a1Q07563 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC39.83■■■■□ 3.97
Col17a1Q07563 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC39.83■■■■□ 3.97
Col17a1Q07563 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC39.81■■■■□ 3.96
Col17a1Q07563 Gm11687-201ENSMUST00000118911 886 ntBASIC39.79■■■■□ 3.96
Col17a1Q07563 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC39.79■■■■□ 3.96
Col17a1Q07563 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC39.79■■■■□ 3.96
Col17a1Q07563 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC39.78■■■■□ 3.96
Col17a1Q07563 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC39.75■■■■□ 3.95
Col17a1Q07563 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC39.75■■■■□ 3.95
Col17a1Q07563 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC39.74■■■■□ 3.95
Col17a1Q07563 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC39.73■■■■□ 3.95
Col17a1Q07563 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC39.73■■■■□ 3.95
Col17a1Q07563 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC39.73■■■■□ 3.95
Col17a1Q07563 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC39.73■■■■□ 3.95
Col17a1Q07563 Gm9806-201ENSMUST00000051080 552 ntBASIC39.73■■■■□ 3.95
Col17a1Q07563 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC39.73■■■■□ 3.95
Col17a1Q07563 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC39.71■■■■□ 3.95
Col17a1Q07563 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC39.71■■■■□ 3.95
Col17a1Q07563 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC39.69■■■■□ 3.94
Col17a1Q07563 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
Col17a1Q07563 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
Col17a1Q07563 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
Col17a1Q07563 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC39.67■■■■□ 3.94
Col17a1Q07563 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC39.64■■■■□ 3.94
Col17a1Q07563 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC39.64■■■■□ 3.94
Col17a1Q07563 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.93
Col17a1Q07563 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
Col17a1Q07563 Gm27502-201ENSMUST00000183495 199 ntBASIC39.61■■■■□ 3.93
Col17a1Q07563 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
Col17a1Q07563 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC39.6■■■■□ 3.93
Col17a1Q07563 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC39.59■■■■□ 3.93
Col17a1Q07563 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC39.57■■■■□ 3.93
Col17a1Q07563 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC39.56■■■■□ 3.92
Col17a1Q07563 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC39.55■■■■□ 3.92
Col17a1Q07563 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
Col17a1Q07563 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
Col17a1Q07563 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC39.52■■■■□ 3.92
Col17a1Q07563 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC39.52■■■■□ 3.92
Col17a1Q07563 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
Col17a1Q07563 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC39.51■■■■□ 3.91
Col17a1Q07563 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
Col17a1Q07563 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC39.49■■■■□ 3.91
Col17a1Q07563 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
Col17a1Q07563 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC39.48■■■■□ 3.91
Col17a1Q07563 Gm16437-201ENSMUST00000025669 507 ntBASIC39.48■■■■□ 3.91
Col17a1Q07563 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC39.47■■■■□ 3.91
Col17a1Q07563 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC39.47■■■■□ 3.91
Col17a1Q07563 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC39.46■■■■□ 3.91
Col17a1Q07563 Gm15546-201ENSMUST00000122095 826 ntBASIC39.46■■■■□ 3.91
Col17a1Q07563 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC39.46■■■■□ 3.91
Col17a1Q07563 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC39.45■■■■□ 3.91
Col17a1Q07563 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC39.44■■■■□ 3.9
Col17a1Q07563 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC39.44■■■■□ 3.9
Col17a1Q07563 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC39.44■■■■□ 3.9
Col17a1Q07563 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC39.43■■■■□ 3.9
Col17a1Q07563 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC39.43■■■■□ 3.9
Col17a1Q07563 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC39.43■■■■□ 3.9
Col17a1Q07563 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC39.43■■■■□ 3.9
Col17a1Q07563 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC39.41■■■■□ 3.9
Col17a1Q07563 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC39.4■■■■□ 3.9
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms