Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
H2afb1S4R1E0 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
H2afb1S4R1E0 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
H2afb1S4R1E0 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
H2afb1S4R1E0 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
H2afb1S4R1E0 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
H2afb1S4R1E0 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
H2afb1S4R1E0 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
H2afb1S4R1E0 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
H2afb1S4R1E0 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
H2afb1S4R1E0 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
H2afb1S4R1E0 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
H2afb1S4R1E0 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC22.16■■□□□ 1.14
H2afb1S4R1E0 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
H2afb1S4R1E0 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
H2afb1S4R1E0 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC22.14■■□□□ 1.14
H2afb1S4R1E0 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
H2afb1S4R1E0 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
H2afb1S4R1E0 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
H2afb1S4R1E0 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC22.12■■□□□ 1.13
H2afb1S4R1E0 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC22.12■■□□□ 1.13
H2afb1S4R1E0 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
H2afb1S4R1E0 Amer2-203ENSMUST00000225247 2662 ntBASIC22.11■■□□□ 1.13
H2afb1S4R1E0 Gm24804-201ENSMUST00000174982 85 ntBASIC22.11■■□□□ 1.13
H2afb1S4R1E0 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC22.1■■□□□ 1.13
H2afb1S4R1E0 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC22.1■■□□□ 1.13
H2afb1S4R1E0 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC22.09■■□□□ 1.13
H2afb1S4R1E0 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
H2afb1S4R1E0 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
H2afb1S4R1E0 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC22.07■■□□□ 1.12
H2afb1S4R1E0 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
H2afb1S4R1E0 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
H2afb1S4R1E0 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
H2afb1S4R1E0 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
H2afb1S4R1E0 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
H2afb1S4R1E0 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
H2afb1S4R1E0 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
H2afb1S4R1E0 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
H2afb1S4R1E0 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC22.02■■□□□ 1.12
H2afb1S4R1E0 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
H2afb1S4R1E0 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
H2afb1S4R1E0 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
H2afb1S4R1E0 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
H2afb1S4R1E0 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC21.99■■□□□ 1.11
H2afb1S4R1E0 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
H2afb1S4R1E0 Gm16148-201ENSMUST00000119653 893 ntBASIC21.99■■□□□ 1.11
H2afb1S4R1E0 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
H2afb1S4R1E0 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
H2afb1S4R1E0 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
H2afb1S4R1E0 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
H2afb1S4R1E0 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
H2afb1S4R1E0 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
H2afb1S4R1E0 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
H2afb1S4R1E0 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
H2afb1S4R1E0 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
H2afb1S4R1E0 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
H2afb1S4R1E0 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
H2afb1S4R1E0 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
H2afb1S4R1E0 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
H2afb1S4R1E0 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
H2afb1S4R1E0 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
H2afb1S4R1E0 Fezf2-202ENSMUST00000224023 1917 ntBASIC21.95■■□□□ 1.1
H2afb1S4R1E0 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
H2afb1S4R1E0 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
H2afb1S4R1E0 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
H2afb1S4R1E0 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
H2afb1S4R1E0 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
H2afb1S4R1E0 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
H2afb1S4R1E0 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
H2afb1S4R1E0 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC21.92■■□□□ 1.1
H2afb1S4R1E0 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
H2afb1S4R1E0 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
H2afb1S4R1E0 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
H2afb1S4R1E0 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
H2afb1S4R1E0 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
H2afb1S4R1E0 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
H2afb1S4R1E0 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC21.9■■□□□ 1.1
H2afb1S4R1E0 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
H2afb1S4R1E0 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC21.89■■□□□ 1.09
H2afb1S4R1E0 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
H2afb1S4R1E0 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
H2afb1S4R1E0 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
H2afb1S4R1E0 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC21.85■■□□□ 1.09
H2afb1S4R1E0 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
H2afb1S4R1E0 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
H2afb1S4R1E0 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC21.84■■□□□ 1.09
H2afb1S4R1E0 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
H2afb1S4R1E0 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC21.83■■□□□ 1.09
H2afb1S4R1E0 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
H2afb1S4R1E0 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
H2afb1S4R1E0 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.82■■□□□ 1.08
H2afb1S4R1E0 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
H2afb1S4R1E0 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
H2afb1S4R1E0 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
H2afb1S4R1E0 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
H2afb1S4R1E0 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
H2afb1S4R1E0 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
H2afb1S4R1E0 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
H2afb1S4R1E0 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
H2afb1S4R1E0 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC21.79■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 12.7 ms