Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Smco4Q9JIS3 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smco4Q9JIS3 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.88■□□□□ 0.77
Smco4Q9JIS3 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Smco4Q9JIS3 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Smco4Q9JIS3 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Smco4Q9JIS3 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Smco4Q9JIS3 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smco4Q9JIS3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Smco4Q9JIS3 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smco4Q9JIS3 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Smco4Q9JIS3 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Smco4Q9JIS3 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Smco4Q9JIS3 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC19.82■□□□□ 0.76
Smco4Q9JIS3 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
Smco4Q9JIS3 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Smco4Q9JIS3 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Smco4Q9JIS3 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Smco4Q9JIS3 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Smco4Q9JIS3 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Smco4Q9JIS3 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Smco4Q9JIS3 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Smco4Q9JIS3 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Smco4Q9JIS3 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Smco4Q9JIS3 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Smco4Q9JIS3 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Smco4Q9JIS3 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Smco4Q9JIS3 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Smco4Q9JIS3 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Smco4Q9JIS3 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
Smco4Q9JIS3 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Smco4Q9JIS3 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Smco4Q9JIS3 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Smco4Q9JIS3 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smco4Q9JIS3 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Smco4Q9JIS3 Gm20634-201ENSMUST00000090779 2956 ntBASIC19.74■□□□□ 0.75
Smco4Q9JIS3 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smco4Q9JIS3 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Smco4Q9JIS3 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smco4Q9JIS3 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Smco4Q9JIS3 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smco4Q9JIS3 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC19.72■□□□□ 0.75
Smco4Q9JIS3 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smco4Q9JIS3 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Smco4Q9JIS3 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
Smco4Q9JIS3 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smco4Q9JIS3 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smco4Q9JIS3 Gm17641-201ENSMUST00000166328 2350 ntBASIC19.69■□□□□ 0.74
Smco4Q9JIS3 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Smco4Q9JIS3 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Smco4Q9JIS3 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smco4Q9JIS3 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Smco4Q9JIS3 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smco4Q9JIS3 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Smco4Q9JIS3 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Smco4Q9JIS3 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smco4Q9JIS3 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Smco4Q9JIS3 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smco4Q9JIS3 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smco4Q9JIS3 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smco4Q9JIS3 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Smco4Q9JIS3 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Smco4Q9JIS3 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Smco4Q9JIS3 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Smco4Q9JIS3 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.63■□□□□ 0.73
Smco4Q9JIS3 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smco4Q9JIS3 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smco4Q9JIS3 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smco4Q9JIS3 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smco4Q9JIS3 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Smco4Q9JIS3 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Smco4Q9JIS3 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smco4Q9JIS3 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
Smco4Q9JIS3 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Smco4Q9JIS3 Gm6345-201ENSMUST00000180378 1691 ntBASIC19.61■□□□□ 0.73
Smco4Q9JIS3 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Smco4Q9JIS3 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Smco4Q9JIS3 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
Smco4Q9JIS3 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
Smco4Q9JIS3 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Smco4Q9JIS3 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Smco4Q9JIS3 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC19.59■□□□□ 0.73
Smco4Q9JIS3 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
Smco4Q9JIS3 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Smco4Q9JIS3 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smco4Q9JIS3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smco4Q9JIS3 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Smco4Q9JIS3 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smco4Q9JIS3 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Smco4Q9JIS3 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Smco4Q9JIS3 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Smco4Q9JIS3 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
Smco4Q9JIS3 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Smco4Q9JIS3 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Smco4Q9JIS3 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
Smco4Q9JIS3 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Smco4Q9JIS3 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC19.55■□□□□ 0.72
Smco4Q9JIS3 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smco4Q9JIS3 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Smco4Q9JIS3 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms