Protein–RNA interactions for Protein: Q8CGV8

Mmp28, Matrix metallopeptidase 28 (epilysin), mousemouse

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp28Q8CGV8 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Mmp28Q8CGV8 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Mmp28Q8CGV8 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Mmp28Q8CGV8 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC20.84■□□□□ 0.93
Mmp28Q8CGV8 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Mmp28Q8CGV8 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Mmp28Q8CGV8 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Mmp28Q8CGV8 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Mmp28Q8CGV8 AL845457.1-201ENSMUST00000197244 68 ntBASIC20.81■□□□□ 0.92
Mmp28Q8CGV8 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Mmp28Q8CGV8 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Mmp28Q8CGV8 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Mmp28Q8CGV8 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Mmp28Q8CGV8 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Mmp28Q8CGV8 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Mmp28Q8CGV8 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Mmp28Q8CGV8 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Mmp28Q8CGV8 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Mmp28Q8CGV8 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Mmp28Q8CGV8 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Mmp28Q8CGV8 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Mmp28Q8CGV8 Gm17082-201ENSMUST00000166043 1091 ntBASIC20.74■□□□□ 0.91
Mmp28Q8CGV8 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC20.74■□□□□ 0.91
Mmp28Q8CGV8 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Mmp28Q8CGV8 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Mmp28Q8CGV8 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Mmp28Q8CGV8 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
Mmp28Q8CGV8 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Mmp28Q8CGV8 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Mmp28Q8CGV8 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Mmp28Q8CGV8 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Mmp28Q8CGV8 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Mmp28Q8CGV8 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Mmp28Q8CGV8 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Mmp28Q8CGV8 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Mmp28Q8CGV8 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Mmp28Q8CGV8 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Mmp28Q8CGV8 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Mmp28Q8CGV8 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Mmp28Q8CGV8 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Mmp28Q8CGV8 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Mmp28Q8CGV8 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Mmp28Q8CGV8 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC20.7■□□□□ 0.9
Mmp28Q8CGV8 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Mmp28Q8CGV8 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Mmp28Q8CGV8 Gm27322-201ENSMUST00000184007 104 ntBASIC20.69■□□□□ 0.9
Mmp28Q8CGV8 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Mmp28Q8CGV8 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Mmp28Q8CGV8 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.67■□□□□ 0.9
Mmp28Q8CGV8 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Mmp28Q8CGV8 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Mmp28Q8CGV8 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Mmp28Q8CGV8 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Mmp28Q8CGV8 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Mmp28Q8CGV8 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Mmp28Q8CGV8 Gm26115-201ENSMUST00000175605 87 ntBASIC20.65■□□□□ 0.9
Mmp28Q8CGV8 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC20.65■□□□□ 0.9
Mmp28Q8CGV8 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Mmp28Q8CGV8 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Mmp28Q8CGV8 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Mmp28Q8CGV8 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Mmp28Q8CGV8 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Mmp28Q8CGV8 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Mmp28Q8CGV8 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
Mmp28Q8CGV8 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Mmp28Q8CGV8 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Mmp28Q8CGV8 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Mmp28Q8CGV8 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Mmp28Q8CGV8 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Mmp28Q8CGV8 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Mmp28Q8CGV8 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
Mmp28Q8CGV8 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Mmp28Q8CGV8 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Mmp28Q8CGV8 Mipep-204ENSMUST00000225043 1548 ntBASIC20.59■□□□□ 0.89
Mmp28Q8CGV8 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Mmp28Q8CGV8 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Mmp28Q8CGV8 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Mmp28Q8CGV8 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Mmp28Q8CGV8 Gm8109-201ENSMUST00000194076 746 ntBASIC20.56■□□□□ 0.88
Mmp28Q8CGV8 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Mmp28Q8CGV8 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC20.55■□□□□ 0.88
Mmp28Q8CGV8 AC166822.3-201ENSMUST00000227394 661 ntBASIC20.55■□□□□ 0.88
Mmp28Q8CGV8 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Mmp28Q8CGV8 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Mmp28Q8CGV8 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC20.54■□□□□ 0.88
Mmp28Q8CGV8 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Mmp28Q8CGV8 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Mmp28Q8CGV8 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Mmp28Q8CGV8 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Mmp28Q8CGV8 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Mmp28Q8CGV8 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Mmp28Q8CGV8 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Mmp28Q8CGV8 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Mmp28Q8CGV8 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Mmp28Q8CGV8 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Mmp28Q8CGV8 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Mmp28Q8CGV8 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Mmp28Q8CGV8 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Mmp28Q8CGV8 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Mmp28Q8CGV8 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms