Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav16d-dv11A0A075B617 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav16d-dv11A0A075B617 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav16d-dv11A0A075B617 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC18.03■□□□□ 0.48
Trav16d-dv11A0A075B617 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav16d-dv11A0A075B617 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Trav16d-dv11A0A075B617 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trav16d-dv11A0A075B617 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Trav16d-dv11A0A075B617 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
Trav16d-dv11A0A075B617 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav16d-dv11A0A075B617 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav16d-dv11A0A075B617 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav16d-dv11A0A075B617 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav16d-dv11A0A075B617 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav16d-dv11A0A075B617 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trav16d-dv11A0A075B617 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trav16d-dv11A0A075B617 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav16d-dv11A0A075B617 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav16d-dv11A0A075B617 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav16d-dv11A0A075B617 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav16d-dv11A0A075B617 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav16d-dv11A0A075B617 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Trav16d-dv11A0A075B617 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav16d-dv11A0A075B617 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav16d-dv11A0A075B617 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav16d-dv11A0A075B617 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav16d-dv11A0A075B617 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav16d-dv11A0A075B617 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Trav16d-dv11A0A075B617 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav16d-dv11A0A075B617 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trav16d-dv11A0A075B617 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav16d-dv11A0A075B617 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Trav16d-dv11A0A075B617 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav16d-dv11A0A075B617 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Trav16d-dv11A0A075B617 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav16d-dv11A0A075B617 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav16d-dv11A0A075B617 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trav16d-dv11A0A075B617 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav16d-dv11A0A075B617 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trav16d-dv11A0A075B617 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trav16d-dv11A0A075B617 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
Trav16d-dv11A0A075B617 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
Trav16d-dv11A0A075B617 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Trav16d-dv11A0A075B617 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav16d-dv11A0A075B617 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trav16d-dv11A0A075B617 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav16d-dv11A0A075B617 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav16d-dv11A0A075B617 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trav16d-dv11A0A075B617 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav16d-dv11A0A075B617 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav16d-dv11A0A075B617 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav16d-dv11A0A075B617 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC17.86■□□□□ 0.45
Trav16d-dv11A0A075B617 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav16d-dv11A0A075B617 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav16d-dv11A0A075B617 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav16d-dv11A0A075B617 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav16d-dv11A0A075B617 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Trav16d-dv11A0A075B617 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav16d-dv11A0A075B617 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav16d-dv11A0A075B617 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trav16d-dv11A0A075B617 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav16d-dv11A0A075B617 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav16d-dv11A0A075B617 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC17.81■□□□□ 0.44
Trav16d-dv11A0A075B617 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Trav16d-dv11A0A075B617 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav16d-dv11A0A075B617 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav16d-dv11A0A075B617 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trav16d-dv11A0A075B617 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav16d-dv11A0A075B617 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav16d-dv11A0A075B617 Gm30346-201ENSMUST00000218641 1699 ntBASIC17.79■□□□□ 0.44
Trav16d-dv11A0A075B617 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC17.79■□□□□ 0.44
Trav16d-dv11A0A075B617 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
Trav16d-dv11A0A075B617 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC17.78■□□□□ 0.44
Trav16d-dv11A0A075B617 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav16d-dv11A0A075B617 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trav16d-dv11A0A075B617 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav16d-dv11A0A075B617 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trav16d-dv11A0A075B617 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Trav16d-dv11A0A075B617 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav16d-dv11A0A075B617 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Trav16d-dv11A0A075B617 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 110.6 ms