Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Sh3rf1Q69ZI1 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sh3rf1Q69ZI1 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Sh3rf1Q69ZI1 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Sh3rf1Q69ZI1 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Sh3rf1Q69ZI1 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Sh3rf1Q69ZI1 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Reep4-203ENSMUST00000226563 1444 ntBASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Sh3rf1Q69ZI1 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Gm27011-201ENSMUST00000182352 972 ntBASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Sh3rf1Q69ZI1 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Sh3rf1Q69ZI1 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms