Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim60Q8VI40 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC19.19■□□□□ 0.66
Trim60Q8VI40 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim60Q8VI40 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim60Q8VI40 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim60Q8VI40 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC19.18■□□□□ 0.66
Trim60Q8VI40 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trim60Q8VI40 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim60Q8VI40 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim60Q8VI40 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim60Q8VI40 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim60Q8VI40 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Trim60Q8VI40 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim60Q8VI40 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim60Q8VI40 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim60Q8VI40 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim60Q8VI40 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim60Q8VI40 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim60Q8VI40 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim60Q8VI40 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim60Q8VI40 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim60Q8VI40 Gm26833-201ENSMUST00000180899 440 ntBASIC19.17■□□□□ 0.66
Trim60Q8VI40 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim60Q8VI40 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trim60Q8VI40 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim60Q8VI40 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim60Q8VI40 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
Trim60Q8VI40 Dmtn-210ENSMUST00000228824 2377 ntBASIC19.17■□□□□ 0.66
Trim60Q8VI40 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim60Q8VI40 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC19.16■□□□□ 0.66
Trim60Q8VI40 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim60Q8VI40 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim60Q8VI40 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Trim60Q8VI40 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 AC123834.2-201ENSMUST00000224038 2340 ntBASIC19.15■□□□□ 0.66
Trim60Q8VI40 Grk6-206ENSMUST00000224995 2971 ntBASIC19.15■□□□□ 0.66
Trim60Q8VI40 Gm43182-201ENSMUST00000199476 2528 ntBASIC19.15■□□□□ 0.66
Trim60Q8VI40 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim60Q8VI40 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Trim60Q8VI40 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim60Q8VI40 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim60Q8VI40 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim60Q8VI40 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Gm27454-201ENSMUST00000185090 204 ntBASIC19.14■□□□□ 0.65
Trim60Q8VI40 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.14■□□□□ 0.65
Trim60Q8VI40 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim60Q8VI40 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim60Q8VI40 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim60Q8VI40 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.13■□□□□ 0.65
Trim60Q8VI40 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim60Q8VI40 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
Trim60Q8VI40 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Trim60Q8VI40 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim60Q8VI40 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim60Q8VI40 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC19.13■□□□□ 0.65
Trim60Q8VI40 Gm6139-201ENSMUST00000079261 882 ntBASIC19.13■□□□□ 0.65
Trim60Q8VI40 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim60Q8VI40 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Trim60Q8VI40 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms