Protein–RNA interactions for Protein: Q6P5D8

Smchd1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, mousemouse

Known RBP Predictions only

Length 2,007 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smchd1Q6P5D8 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smchd1Q6P5D8 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smchd1Q6P5D8 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Smchd1Q6P5D8 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smchd1Q6P5D8 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smchd1Q6P5D8 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Smchd1Q6P5D8 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smchd1Q6P5D8 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smchd1Q6P5D8 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Smchd1Q6P5D8 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Smchd1Q6P5D8 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smchd1Q6P5D8 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 Gm13168-201ENSMUST00000121771 632 ntBASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Smchd1Q6P5D8 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC20.7■□□□□ 0.91
Smchd1Q6P5D8 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smchd1Q6P5D8 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smchd1Q6P5D8 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Smchd1Q6P5D8 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC20.7■□□□□ 0.9
Smchd1Q6P5D8 AC140264.2-202ENSMUST00000218746 817 ntBASIC20.7■□□□□ 0.9
Smchd1Q6P5D8 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smchd1Q6P5D8 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Smchd1Q6P5D8 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Smchd1Q6P5D8 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Smchd1Q6P5D8 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Smchd1Q6P5D8 Gm20760-201ENSMUST00000179197 648 ntBASIC20.7■□□□□ 0.9
Smchd1Q6P5D8 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smchd1Q6P5D8 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smchd1Q6P5D8 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Smchd1Q6P5D8 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Smchd1Q6P5D8 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smchd1Q6P5D8 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.69■□□□□ 0.9
Smchd1Q6P5D8 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Smchd1Q6P5D8 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC20.69■□□□□ 0.9
Smchd1Q6P5D8 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smchd1Q6P5D8 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Smchd1Q6P5D8 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Smchd1Q6P5D8 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
Smchd1Q6P5D8 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smchd1Q6P5D8 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smchd1Q6P5D8 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smchd1Q6P5D8 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC20.68■□□□□ 0.9
Smchd1Q6P5D8 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Smchd1Q6P5D8 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smchd1Q6P5D8 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Smchd1Q6P5D8 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smchd1Q6P5D8 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smchd1Q6P5D8 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smchd1Q6P5D8 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Smchd1Q6P5D8 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smchd1Q6P5D8 Gm5643-201ENSMUST00000117081 966 ntBASIC20.66■□□□□ 0.9
Smchd1Q6P5D8 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smchd1Q6P5D8 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Smchd1Q6P5D8 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smchd1Q6P5D8 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smchd1Q6P5D8 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smchd1Q6P5D8 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.65■□□□□ 0.9
Smchd1Q6P5D8 Gm44878-201ENSMUST00000205812 1295 ntBASIC20.65■□□□□ 0.9
Smchd1Q6P5D8 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smchd1Q6P5D8 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smchd1Q6P5D8 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smchd1Q6P5D8 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Smchd1Q6P5D8 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smchd1Q6P5D8 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smchd1Q6P5D8 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smchd1Q6P5D8 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC20.65■□□□□ 0.9
Smchd1Q6P5D8 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Smchd1Q6P5D8 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smchd1Q6P5D8 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smchd1Q6P5D8 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smchd1Q6P5D8 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Smchd1Q6P5D8 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 100.1 ms