Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CtcfQ61164 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CtcfQ61164 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CtcfQ61164 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CtcfQ61164 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC20.55■□□□□ 0.88
CtcfQ61164 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.55■□□□□ 0.88
CtcfQ61164 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CtcfQ61164 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CtcfQ61164 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CtcfQ61164 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.55■□□□□ 0.88
CtcfQ61164 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CtcfQ61164 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CtcfQ61164 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CtcfQ61164 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CtcfQ61164 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CtcfQ61164 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CtcfQ61164 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CtcfQ61164 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CtcfQ61164 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.54■□□□□ 0.88
CtcfQ61164 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CtcfQ61164 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CtcfQ61164 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CtcfQ61164 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CtcfQ61164 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CtcfQ61164 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CtcfQ61164 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.53■□□□□ 0.88
CtcfQ61164 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CtcfQ61164 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.53■□□□□ 0.88
CtcfQ61164 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.53■□□□□ 0.88
CtcfQ61164 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CtcfQ61164 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CtcfQ61164 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CtcfQ61164 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CtcfQ61164 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CtcfQ61164 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CtcfQ61164 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.53■□□□□ 0.88
CtcfQ61164 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CtcfQ61164 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CtcfQ61164 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
CtcfQ61164 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.52■□□□□ 0.88
CtcfQ61164 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 Gm13241-201ENSMUST00000094493 780 ntBASIC20.52■□□□□ 0.88
CtcfQ61164 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CtcfQ61164 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CtcfQ61164 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CtcfQ61164 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CtcfQ61164 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CtcfQ61164 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CtcfQ61164 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CtcfQ61164 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CtcfQ61164 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CtcfQ61164 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CtcfQ61164 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CtcfQ61164 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CtcfQ61164 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CtcfQ61164 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CtcfQ61164 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CtcfQ61164 Gm27454-201ENSMUST00000185090 204 ntBASIC20.51■□□□□ 0.87
CtcfQ61164 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.51■□□□□ 0.87
CtcfQ61164 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC20.51■□□□□ 0.87
CtcfQ61164 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CtcfQ61164 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CtcfQ61164 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CtcfQ61164 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CtcfQ61164 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CtcfQ61164 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CtcfQ61164 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CtcfQ61164 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CtcfQ61164 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CtcfQ61164 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CtcfQ61164 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CtcfQ61164 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CtcfQ61164 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CtcfQ61164 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CtcfQ61164 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC20.49■□□□□ 0.87
CtcfQ61164 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CtcfQ61164 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CtcfQ61164 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CtcfQ61164 Smad6-203ENSMUST00000179458 273 ntBASIC20.49■□□□□ 0.87
CtcfQ61164 Gm43173-201ENSMUST00000202246 593 ntBASIC20.49■□□□□ 0.87
CtcfQ61164 Gm45417-201ENSMUST00000209533 758 ntBASIC20.49■□□□□ 0.87
CtcfQ61164 Gm40848-201ENSMUST00000221998 324 ntBASIC20.49■□□□□ 0.87
CtcfQ61164 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.49■□□□□ 0.87
CtcfQ61164 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CtcfQ61164 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC20.49■□□□□ 0.87
CtcfQ61164 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.49■□□□□ 0.87
CtcfQ61164 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CtcfQ61164 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CtcfQ61164 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 177.8 ms