Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CtcfQ61164 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CtcfQ61164 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CtcfQ61164 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CtcfQ61164 Grk6-206ENSMUST00000224995 2971 ntBASIC20.64■□□□□ 0.89
CtcfQ61164 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
CtcfQ61164 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
CtcfQ61164 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CtcfQ61164 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CtcfQ61164 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CtcfQ61164 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CtcfQ61164 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CtcfQ61164 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CtcfQ61164 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CtcfQ61164 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CtcfQ61164 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CtcfQ61164 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CtcfQ61164 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CtcfQ61164 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CtcfQ61164 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CtcfQ61164 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC20.62■□□□□ 0.89
CtcfQ61164 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CtcfQ61164 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CtcfQ61164 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CtcfQ61164 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CtcfQ61164 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC20.62■□□□□ 0.89
CtcfQ61164 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CtcfQ61164 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CtcfQ61164 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CtcfQ61164 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CtcfQ61164 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CtcfQ61164 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.61■□□□□ 0.89
CtcfQ61164 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CtcfQ61164 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CtcfQ61164 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CtcfQ61164 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.61■□□□□ 0.89
CtcfQ61164 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
CtcfQ61164 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CtcfQ61164 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CtcfQ61164 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CtcfQ61164 Gm15853-202ENSMUST00000195518 2041 ntBASIC20.61■□□□□ 0.89
CtcfQ61164 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CtcfQ61164 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CtcfQ61164 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CtcfQ61164 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CtcfQ61164 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CtcfQ61164 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CtcfQ61164 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CtcfQ61164 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CtcfQ61164 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CtcfQ61164 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CtcfQ61164 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CtcfQ61164 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CtcfQ61164 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CtcfQ61164 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.59■□□□□ 0.89
CtcfQ61164 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CtcfQ61164 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CtcfQ61164 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CtcfQ61164 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CtcfQ61164 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CtcfQ61164 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CtcfQ61164 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CtcfQ61164 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CtcfQ61164 Mir7075-201ENSMUST00000184187 82 ntBASIC20.59■□□□□ 0.89
CtcfQ61164 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CtcfQ61164 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CtcfQ61164 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CtcfQ61164 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CtcfQ61164 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.59■□□□□ 0.89
CtcfQ61164 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CtcfQ61164 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CtcfQ61164 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CtcfQ61164 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CtcfQ61164 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC20.58■□□□□ 0.89
CtcfQ61164 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC20.58■□□□□ 0.89
CtcfQ61164 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CtcfQ61164 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.58■□□□□ 0.88
CtcfQ61164 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CtcfQ61164 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CtcfQ61164 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CtcfQ61164 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CtcfQ61164 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CtcfQ61164 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CtcfQ61164 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CtcfQ61164 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CtcfQ61164 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CtcfQ61164 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.57■□□□□ 0.88
CtcfQ61164 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CtcfQ61164 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CtcfQ61164 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.57■□□□□ 0.88
CtcfQ61164 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CtcfQ61164 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CtcfQ61164 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CtcfQ61164 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC20.56■□□□□ 0.88
CtcfQ61164 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC20.56■□□□□ 0.88
CtcfQ61164 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC20.56■□□□□ 0.88
CtcfQ61164 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.56■□□□□ 0.88
CtcfQ61164 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CtcfQ61164 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CtcfQ61164 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms