Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
Msh3P13705 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.83■□□□□ 0.92
Msh3P13705 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh3P13705 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Msh3P13705 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh3P13705 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.82■□□□□ 0.92
Msh3P13705 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh3P13705 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh3P13705 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.82■□□□□ 0.92
Msh3P13705 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Msh3P13705 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.82■□□□□ 0.92
Msh3P13705 Gm10033-202ENSMUST00000211874 928 ntBASIC20.82■□□□□ 0.92
Msh3P13705 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh3P13705 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Msh3P13705 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Msh3P13705 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Msh3P13705 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh3P13705 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh3P13705 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh3P13705 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.81■□□□□ 0.92
Msh3P13705 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh3P13705 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh3P13705 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Msh3P13705 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh3P13705 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh3P13705 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh3P13705 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh3P13705 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Msh3P13705 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh3P13705 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh3P13705 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh3P13705 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh3P13705 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.8■□□□□ 0.92
Msh3P13705 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Msh3P13705 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.8■□□□□ 0.92
Msh3P13705 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC20.8■□□□□ 0.92
Msh3P13705 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh3P13705 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh3P13705 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Msh3P13705 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Msh3P13705 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh3P13705 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh3P13705 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Msh3P13705 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Msh3P13705 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh3P13705 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh3P13705 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Msh3P13705 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Msh3P13705 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC20.79■□□□□ 0.92
Msh3P13705 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh3P13705 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh3P13705 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Msh3P13705 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh3P13705 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh3P13705 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
Msh3P13705 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh3P13705 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Msh3P13705 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.78■□□□□ 0.92
Msh3P13705 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC20.78■□□□□ 0.92
Msh3P13705 Gm19094-201ENSMUST00000209791 1246 ntBASIC20.78■□□□□ 0.92
Msh3P13705 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh3P13705 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Msh3P13705 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh3P13705 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.78■□□□□ 0.92
Msh3P13705 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh3P13705 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh3P13705 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh3P13705 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC20.77■□□□□ 0.92
Msh3P13705 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.77■□□□□ 0.92
Msh3P13705 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh3P13705 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh3P13705 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh3P13705 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh3P13705 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Msh3P13705 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Msh3P13705 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Msh3P13705 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.77■□□□□ 0.91
Msh3P13705 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Msh3P13705 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Msh3P13705 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh3P13705 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.76■□□□□ 0.91
Msh3P13705 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Msh3P13705 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh3P13705 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Msh3P13705 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Msh3P13705 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Msh3P13705 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh3P13705 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Msh3P13705 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh3P13705 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Msh3P13705 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh3P13705 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh3P13705 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Msh3P13705 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Msh3P13705 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh3P13705 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh3P13705 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Msh3P13705 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh3P13705 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh3P13705 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 70 ms