Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Clp1Q99LI9 Mir1199-201ENSMUST00000117015 119 ntBASIC20.07■□□□□ 0.8
Clp1Q99LI9 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Clp1Q99LI9 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Clp1Q99LI9 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC20.06■□□□□ 0.8
Clp1Q99LI9 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Clp1Q99LI9 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Clp1Q99LI9 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.06■□□□□ 0.8
Clp1Q99LI9 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Clp1Q99LI9 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Clp1Q99LI9 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Clp1Q99LI9 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Clp1Q99LI9 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Clp1Q99LI9 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Clp1Q99LI9 Gm15565-201ENSMUST00000118890 427 ntBASIC20.05■□□□□ 0.8
Clp1Q99LI9 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC20.05■□□□□ 0.8
Clp1Q99LI9 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.05■□□□□ 0.8
Clp1Q99LI9 H2-K2-201ENSMUST00000174250 1049 ntBASIC20.05■□□□□ 0.8
Clp1Q99LI9 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Clp1Q99LI9 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Clp1Q99LI9 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Clp1Q99LI9 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Clp1Q99LI9 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Clp1Q99LI9 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC20.04■□□□□ 0.8
Clp1Q99LI9 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC20.04■□□□□ 0.8
Clp1Q99LI9 Gm9484-201ENSMUST00000195892 1159 ntBASIC20.04■□□□□ 0.8
Clp1Q99LI9 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
Clp1Q99LI9 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC20.04■□□□□ 0.8
Clp1Q99LI9 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC20.04■□□□□ 0.8
Clp1Q99LI9 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Clp1Q99LI9 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Clp1Q99LI9 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Clp1Q99LI9 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Clp1Q99LI9 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Clp1Q99LI9 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Clp1Q99LI9 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Clp1Q99LI9 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Clp1Q99LI9 Gm13158-201ENSMUST00000122007 736 ntBASIC20.03■□□□□ 0.8
Clp1Q99LI9 Gm37055-201ENSMUST00000191866 133 ntBASIC20.03■□□□□ 0.8
Clp1Q99LI9 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC20.03■□□□□ 0.8
Clp1Q99LI9 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Clp1Q99LI9 AC130671.1-201ENSMUST00000227384 1237 ntBASIC20.03■□□□□ 0.8
Clp1Q99LI9 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Clp1Q99LI9 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Clp1Q99LI9 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC20.03■□□□□ 0.8
Clp1Q99LI9 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Clp1Q99LI9 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Clp1Q99LI9 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Clp1Q99LI9 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.03■□□□□ 0.8
Clp1Q99LI9 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Gm15847-201ENSMUST00000121417 1065 ntBASIC20.02■□□□□ 0.8
Clp1Q99LI9 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC20.02■□□□□ 0.8
Clp1Q99LI9 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Clp1Q99LI9 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Clp1Q99LI9 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Clp1Q99LI9 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Clp1Q99LI9 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Clp1Q99LI9 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Clp1Q99LI9 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Clp1Q99LI9 Gm19094-201ENSMUST00000209791 1246 ntBASIC20.01■□□□□ 0.79
Clp1Q99LI9 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Clp1Q99LI9 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Clp1Q99LI9 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20■□□□□ 0.79
Clp1Q99LI9 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Clp1Q99LI9 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20■□□□□ 0.79
Clp1Q99LI9 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20■□□□□ 0.79
Clp1Q99LI9 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Clp1Q99LI9 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC20■□□□□ 0.79
Clp1Q99LI9 Gm11643-201ENSMUST00000119578 864 ntBASIC20■□□□□ 0.79
Clp1Q99LI9 AC163280.1-201ENSMUST00000228194 1100 ntBASIC20■□□□□ 0.79
Clp1Q99LI9 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Clp1Q99LI9 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20■□□□□ 0.79
Clp1Q99LI9 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Clp1Q99LI9 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Clp1Q99LI9 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Clp1Q99LI9 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC20■□□□□ 0.79
Clp1Q99LI9 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Clp1Q99LI9 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Clp1Q99LI9 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Clp1Q99LI9 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Clp1Q99LI9 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Clp1Q99LI9 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Clp1Q99LI9 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Clp1Q99LI9 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Clp1Q99LI9 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Clp1Q99LI9 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 236.2 ms