Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CtcfQ61164 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CtcfQ61164 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CtcfQ61164 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CtcfQ61164 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CtcfQ61164 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CtcfQ61164 Gm9847-201ENSMUST00000052528 599 ntBASIC20.8■□□□□ 0.92
CtcfQ61164 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CtcfQ61164 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CtcfQ61164 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CtcfQ61164 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.8■□□□□ 0.92
CtcfQ61164 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.8■□□□□ 0.92
CtcfQ61164 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CtcfQ61164 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CtcfQ61164 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
CtcfQ61164 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CtcfQ61164 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CtcfQ61164 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CtcfQ61164 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CtcfQ61164 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CtcfQ61164 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CtcfQ61164 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CtcfQ61164 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CtcfQ61164 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CtcfQ61164 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CtcfQ61164 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CtcfQ61164 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CtcfQ61164 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CtcfQ61164 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.78■□□□□ 0.92
CtcfQ61164 BC021767-201ENSMUST00000126387 1716 ntBASIC20.78■□□□□ 0.92
CtcfQ61164 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CtcfQ61164 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CtcfQ61164 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CtcfQ61164 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CtcfQ61164 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CtcfQ61164 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC20.78■□□□□ 0.92
CtcfQ61164 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CtcfQ61164 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CtcfQ61164 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CtcfQ61164 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CtcfQ61164 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CtcfQ61164 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CtcfQ61164 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CtcfQ61164 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CtcfQ61164 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CtcfQ61164 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CtcfQ61164 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.77■□□□□ 0.92
CtcfQ61164 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CtcfQ61164 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CtcfQ61164 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CtcfQ61164 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CtcfQ61164 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
CtcfQ61164 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
CtcfQ61164 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CtcfQ61164 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CtcfQ61164 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CtcfQ61164 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
CtcfQ61164 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CtcfQ61164 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CtcfQ61164 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CtcfQ61164 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC20.76■□□□□ 0.91
CtcfQ61164 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC20.76■□□□□ 0.91
CtcfQ61164 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CtcfQ61164 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CtcfQ61164 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.76■□□□□ 0.91
CtcfQ61164 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CtcfQ61164 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CtcfQ61164 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CtcfQ61164 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CtcfQ61164 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC20.75■□□□□ 0.91
CtcfQ61164 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC20.75■□□□□ 0.91
CtcfQ61164 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC20.75■□□□□ 0.91
CtcfQ61164 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.75■□□□□ 0.91
CtcfQ61164 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CtcfQ61164 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CtcfQ61164 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CtcfQ61164 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CtcfQ61164 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CtcfQ61164 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CtcfQ61164 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CtcfQ61164 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CtcfQ61164 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC20.74■□□□□ 0.91
CtcfQ61164 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CtcfQ61164 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CtcfQ61164 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
CtcfQ61164 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CtcfQ61164 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CtcfQ61164 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CtcfQ61164 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CtcfQ61164 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CtcfQ61164 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CtcfQ61164 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CtcfQ61164 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CtcfQ61164 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CtcfQ61164 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CtcfQ61164 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CtcfQ61164 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CtcfQ61164 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CtcfQ61164 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CtcfQ61164 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 891 ms