Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC17.2■□□□□ 0.34
H2afb1S4R1E0 Gm9207-201ENSMUST00000198773 1115 ntBASIC17.2■□□□□ 0.34
H2afb1S4R1E0 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
H2afb1S4R1E0 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
H2afb1S4R1E0 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
H2afb1S4R1E0 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
H2afb1S4R1E0 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC17.2■□□□□ 0.34
H2afb1S4R1E0 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
H2afb1S4R1E0 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Fam105a-203ENSMUST00000226170 3043 ntBASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
H2afb1S4R1E0 Gm10209-201ENSMUST00000203397 1607 ntBASIC17.18■□□□□ 0.34
H2afb1S4R1E0 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
H2afb1S4R1E0 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
H2afb1S4R1E0 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
H2afb1S4R1E0 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
H2afb1S4R1E0 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
H2afb1S4R1E0 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
H2afb1S4R1E0 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
H2afb1S4R1E0 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC17.16■□□□□ 0.34
H2afb1S4R1E0 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC17.16■□□□□ 0.34
H2afb1S4R1E0 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC17.16■□□□□ 0.34
H2afb1S4R1E0 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
H2afb1S4R1E0 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
H2afb1S4R1E0 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
H2afb1S4R1E0 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.16■□□□□ 0.34
H2afb1S4R1E0 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
H2afb1S4R1E0 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
H2afb1S4R1E0 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
H2afb1S4R1E0 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
H2afb1S4R1E0 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
H2afb1S4R1E0 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
H2afb1S4R1E0 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
H2afb1S4R1E0 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
H2afb1S4R1E0 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
H2afb1S4R1E0 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
H2afb1S4R1E0 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
H2afb1S4R1E0 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
H2afb1S4R1E0 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
H2afb1S4R1E0 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
H2afb1S4R1E0 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms