Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Vps28Q9D1C8 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.48■□□□□ 0.71
Vps28Q9D1C8 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Vps28Q9D1C8 Gm27405-201ENSMUST00000184201 112 ntBASIC19.48■□□□□ 0.71
Vps28Q9D1C8 Gm7291-201ENSMUST00000199147 382 ntBASIC19.48■□□□□ 0.71
Vps28Q9D1C8 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Vps28Q9D1C8 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Vps28Q9D1C8 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Vps28Q9D1C8 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Vps28Q9D1C8 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vps28Q9D1C8 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Vps28Q9D1C8 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Vps28Q9D1C8 Gm38205-201ENSMUST00000192243 258 ntBASIC19.47■□□□□ 0.71
Vps28Q9D1C8 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC19.47■□□□□ 0.71
Vps28Q9D1C8 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vps28Q9D1C8 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vps28Q9D1C8 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vps28Q9D1C8 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vps28Q9D1C8 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vps28Q9D1C8 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Vps28Q9D1C8 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Vps28Q9D1C8 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.46■□□□□ 0.71
Vps28Q9D1C8 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vps28Q9D1C8 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vps28Q9D1C8 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Vps28Q9D1C8 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Vps28Q9D1C8 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vps28Q9D1C8 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Vps28Q9D1C8 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Vps28Q9D1C8 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Vps28Q9D1C8 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Vps28Q9D1C8 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
Vps28Q9D1C8 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Vps28Q9D1C8 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Vps28Q9D1C8 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vps28Q9D1C8 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Vps28Q9D1C8 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vps28Q9D1C8 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vps28Q9D1C8 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.44■□□□□ 0.7
Vps28Q9D1C8 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vps28Q9D1C8 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Vps28Q9D1C8 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vps28Q9D1C8 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vps28Q9D1C8 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Vps28Q9D1C8 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Vps28Q9D1C8 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Vps28Q9D1C8 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC19.44■□□□□ 0.7
Vps28Q9D1C8 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vps28Q9D1C8 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Vps28Q9D1C8 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Vps28Q9D1C8 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
Vps28Q9D1C8 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Vps28Q9D1C8 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.42■□□□□ 0.7
Vps28Q9D1C8 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC19.42■□□□□ 0.7
Vps28Q9D1C8 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.42■□□□□ 0.7
Vps28Q9D1C8 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Vps28Q9D1C8 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Vps28Q9D1C8 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC19.42■□□□□ 0.7
Vps28Q9D1C8 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Vps28Q9D1C8 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vps28Q9D1C8 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vps28Q9D1C8 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vps28Q9D1C8 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vps28Q9D1C8 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vps28Q9D1C8 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vps28Q9D1C8 Gm7860-201ENSMUST00000121190 879 ntBASIC19.41■□□□□ 0.7
Vps28Q9D1C8 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Vps28Q9D1C8 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Vps28Q9D1C8 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC19.41■□□□□ 0.7
Vps28Q9D1C8 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 73.9 ms