Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CtcfQ61164 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CtcfQ61164 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CtcfQ61164 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CtcfQ61164 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CtcfQ61164 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CtcfQ61164 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CtcfQ61164 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CtcfQ61164 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CtcfQ61164 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CtcfQ61164 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CtcfQ61164 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CtcfQ61164 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CtcfQ61164 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CtcfQ61164 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CtcfQ61164 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CtcfQ61164 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CtcfQ61164 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.86■□□□□ 0.93
CtcfQ61164 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CtcfQ61164 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CtcfQ61164 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CtcfQ61164 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CtcfQ61164 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CtcfQ61164 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CtcfQ61164 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CtcfQ61164 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CtcfQ61164 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CtcfQ61164 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CtcfQ61164 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CtcfQ61164 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CtcfQ61164 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CtcfQ61164 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CtcfQ61164 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CtcfQ61164 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CtcfQ61164 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CtcfQ61164 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CtcfQ61164 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.85■□□□□ 0.93
CtcfQ61164 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.85■□□□□ 0.93
CtcfQ61164 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CtcfQ61164 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.85■□□□□ 0.93
CtcfQ61164 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CtcfQ61164 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CtcfQ61164 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CtcfQ61164 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CtcfQ61164 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CtcfQ61164 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.84■□□□□ 0.93
CtcfQ61164 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CtcfQ61164 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CtcfQ61164 Gm21956-201ENSMUST00000179946 522 ntBASIC20.84■□□□□ 0.93
CtcfQ61164 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.84■□□□□ 0.93
CtcfQ61164 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CtcfQ61164 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CtcfQ61164 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CtcfQ61164 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CtcfQ61164 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CtcfQ61164 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CtcfQ61164 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CtcfQ61164 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
CtcfQ61164 Dmtn-210ENSMUST00000228824 2377 ntBASIC20.83■□□□□ 0.93
CtcfQ61164 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
CtcfQ61164 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CtcfQ61164 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CtcfQ61164 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
CtcfQ61164 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CtcfQ61164 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.83■□□□□ 0.93
CtcfQ61164 Gm12251-201ENSMUST00000117893 792 ntBASIC20.83■□□□□ 0.93
CtcfQ61164 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CtcfQ61164 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CtcfQ61164 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CtcfQ61164 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CtcfQ61164 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CtcfQ61164 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.82■□□□□ 0.92
CtcfQ61164 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 Gm12922-201ENSMUST00000120626 809 ntBASIC20.82■□□□□ 0.92
CtcfQ61164 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC20.82■□□□□ 0.92
CtcfQ61164 Gm43137-201ENSMUST00000198052 594 ntBASIC20.82■□□□□ 0.92
CtcfQ61164 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CtcfQ61164 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CtcfQ61164 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CtcfQ61164 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CtcfQ61164 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CtcfQ61164 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CtcfQ61164 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CtcfQ61164 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CtcfQ61164 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.81■□□□□ 0.92
CtcfQ61164 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CtcfQ61164 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CtcfQ61164 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.81■□□□□ 0.92
CtcfQ61164 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms