Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Gm9870-201ENSMUST00000063874 645 ntBASIC14.91□□□□□ -0.02
Trbv1A0A0B4J1G7 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trbv1A0A0B4J1G7 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trbv1A0A0B4J1G7 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Trbv1A0A0B4J1G7 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trbv1A0A0B4J1G7 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 AC166356.1-201ENSMUST00000228236 1426 ntBASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Trbv1A0A0B4J1G7 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trbv1A0A0B4J1G7 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC14.88□□□□□ -0.03
Trbv1A0A0B4J1G7 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trbv1A0A0B4J1G7 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Trbv1A0A0B4J1G7 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trbv1A0A0B4J1G7 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trbv1A0A0B4J1G7 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
Trbv1A0A0B4J1G7 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trbv1A0A0B4J1G7 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trbv1A0A0B4J1G7 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trbv1A0A0B4J1G7 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Trbv1A0A0B4J1G7 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trbv1A0A0B4J1G7 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trbv1A0A0B4J1G7 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trbv1A0A0B4J1G7 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trbv1A0A0B4J1G7 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
Trbv1A0A0B4J1G7 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC14.85□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms