Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.96■□□□□ 0.95
CtcfQ61164 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CtcfQ61164 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CtcfQ61164 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CtcfQ61164 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CtcfQ61164 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CtcfQ61164 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.96■□□□□ 0.95
CtcfQ61164 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
CtcfQ61164 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CtcfQ61164 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CtcfQ61164 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CtcfQ61164 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CtcfQ61164 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CtcfQ61164 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CtcfQ61164 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CtcfQ61164 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CtcfQ61164 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CtcfQ61164 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CtcfQ61164 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CtcfQ61164 Rarb-207ENSMUST00000225921 2756 ntBASIC20.95■□□□□ 0.94
CtcfQ61164 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CtcfQ61164 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CtcfQ61164 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.94■□□□□ 0.94
CtcfQ61164 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CtcfQ61164 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CtcfQ61164 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
CtcfQ61164 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
CtcfQ61164 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.94■□□□□ 0.94
CtcfQ61164 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CtcfQ61164 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CtcfQ61164 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CtcfQ61164 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CtcfQ61164 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CtcfQ61164 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.93■□□□□ 0.94
CtcfQ61164 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CtcfQ61164 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.93■□□□□ 0.94
CtcfQ61164 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CtcfQ61164 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
CtcfQ61164 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CtcfQ61164 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.93■□□□□ 0.94
CtcfQ61164 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CtcfQ61164 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.93■□□□□ 0.94
CtcfQ61164 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.93■□□□□ 0.94
CtcfQ61164 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CtcfQ61164 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.92■□□□□ 0.94
CtcfQ61164 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.92■□□□□ 0.94
CtcfQ61164 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CtcfQ61164 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CtcfQ61164 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CtcfQ61164 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CtcfQ61164 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC20.92■□□□□ 0.94
CtcfQ61164 Gm43759-201ENSMUST00000196925 1261 ntBASIC20.92■□□□□ 0.94
CtcfQ61164 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CtcfQ61164 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.92■□□□□ 0.94
CtcfQ61164 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CtcfQ61164 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CtcfQ61164 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CtcfQ61164 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CtcfQ61164 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CtcfQ61164 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CtcfQ61164 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CtcfQ61164 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
CtcfQ61164 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CtcfQ61164 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.91■□□□□ 0.94
CtcfQ61164 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CtcfQ61164 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CtcfQ61164 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CtcfQ61164 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.9■□□□□ 0.94
CtcfQ61164 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CtcfQ61164 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.9■□□□□ 0.94
CtcfQ61164 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CtcfQ61164 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.9■□□□□ 0.94
CtcfQ61164 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CtcfQ61164 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
CtcfQ61164 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CtcfQ61164 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.9■□□□□ 0.94
CtcfQ61164 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CtcfQ61164 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.89■□□□□ 0.94
CtcfQ61164 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CtcfQ61164 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CtcfQ61164 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CtcfQ61164 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.89■□□□□ 0.93
CtcfQ61164 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CtcfQ61164 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CtcfQ61164 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CtcfQ61164 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CtcfQ61164 Serp2-204ENSMUST00000228055 705 ntBASIC20.89■□□□□ 0.93
CtcfQ61164 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.89■□□□□ 0.93
CtcfQ61164 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CtcfQ61164 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CtcfQ61164 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CtcfQ61164 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CtcfQ61164 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CtcfQ61164 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CtcfQ61164 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
CtcfQ61164 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.88■□□□□ 0.93
CtcfQ61164 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CtcfQ61164 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CtcfQ61164 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CtcfQ61164 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 445.5 ms