Protein–RNA interactions for Protein: Q3V0C5

Usp48, Ubiquitin carboxyl-terminal hydrolase 48, mousemouse

Predictions only

Length 1,052 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp48Q3V0C5 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Usp48Q3V0C5 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
Usp48Q3V0C5 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.66
Usp48Q3V0C5 Gm8503-201ENSMUST00000118131 455 ntBASIC31.59■■■□□ 2.65
Usp48Q3V0C5 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC31.59■■■□□ 2.65
Usp48Q3V0C5 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Usp48Q3V0C5 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.55■■■□□ 2.64
Usp48Q3V0C5 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Usp48Q3V0C5 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Usp48Q3V0C5 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Usp48Q3V0C5 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Usp48Q3V0C5 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Usp48Q3V0C5 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Usp48Q3V0C5 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Usp48Q3V0C5 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Usp48Q3V0C5 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31.43■■■□□ 2.62
Usp48Q3V0C5 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC31.43■■■□□ 2.62
Usp48Q3V0C5 Gm6821-201ENSMUST00000107540 542 ntBASIC31.42■■■□□ 2.62
Usp48Q3V0C5 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC31.42■■■□□ 2.62
Usp48Q3V0C5 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
Usp48Q3V0C5 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC31.4■■■□□ 2.62
Usp48Q3V0C5 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
Usp48Q3V0C5 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Usp48Q3V0C5 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
Usp48Q3V0C5 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Usp48Q3V0C5 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
Usp48Q3V0C5 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC31.33■■■□□ 2.61
Usp48Q3V0C5 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Usp48Q3V0C5 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Usp48Q3V0C5 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
Usp48Q3V0C5 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Usp48Q3V0C5 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Usp48Q3V0C5 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Usp48Q3V0C5 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Usp48Q3V0C5 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Usp48Q3V0C5 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
Usp48Q3V0C5 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Usp48Q3V0C5 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Usp48Q3V0C5 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC31.16■■■□□ 2.58
Usp48Q3V0C5 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Usp48Q3V0C5 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Usp48Q3V0C5 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Usp48Q3V0C5 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC31.13■■■□□ 2.57
Usp48Q3V0C5 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC31.11■■■□□ 2.57
Usp48Q3V0C5 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Usp48Q3V0C5 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC31.11■■■□□ 2.57
Usp48Q3V0C5 Gm43863-201ENSMUST00000203822 1192 ntBASIC31.11■■■□□ 2.57
Usp48Q3V0C5 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
Usp48Q3V0C5 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Usp48Q3V0C5 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Usp48Q3V0C5 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
Usp48Q3V0C5 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Usp48Q3V0C5 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Usp48Q3V0C5 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Usp48Q3V0C5 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Usp48Q3V0C5 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
Usp48Q3V0C5 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
Usp48Q3V0C5 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.03■■■□□ 2.56
Usp48Q3V0C5 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
Usp48Q3V0C5 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC31■■■□□ 2.55
Usp48Q3V0C5 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
Usp48Q3V0C5 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
Usp48Q3V0C5 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC30.96■■■□□ 2.55
Usp48Q3V0C5 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Usp48Q3V0C5 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC30.94■■■□□ 2.54
Usp48Q3V0C5 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Usp48Q3V0C5 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC30.93■■■□□ 2.54
Usp48Q3V0C5 Gm42809-201ENSMUST00000198429 1138 ntBASIC30.92■■■□□ 2.54
Usp48Q3V0C5 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
Usp48Q3V0C5 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
Usp48Q3V0C5 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
Usp48Q3V0C5 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Usp48Q3V0C5 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
Usp48Q3V0C5 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC30.9■■■□□ 2.54
Usp48Q3V0C5 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Usp48Q3V0C5 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC30.86■■■□□ 2.53
Usp48Q3V0C5 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Usp48Q3V0C5 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC30.83■■■□□ 2.53
Usp48Q3V0C5 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC30.83■■■□□ 2.53
Usp48Q3V0C5 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC30.82■■■□□ 2.52
Usp48Q3V0C5 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Usp48Q3V0C5 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Usp48Q3V0C5 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Usp48Q3V0C5 AC157572.2-201ENSMUST00000226970 908 ntBASIC30.81■■■□□ 2.52
Usp48Q3V0C5 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC30.8■■■□□ 2.52
Usp48Q3V0C5 Gm6658-202ENSMUST00000209493 1885 ntBASIC30.8■■■□□ 2.52
Usp48Q3V0C5 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC30.79■■■□□ 2.52
Usp48Q3V0C5 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Usp48Q3V0C5 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC30.78■■■□□ 2.52
Usp48Q3V0C5 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC30.76■■■□□ 2.51
Usp48Q3V0C5 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC30.76■■■□□ 2.51
Usp48Q3V0C5 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
Usp48Q3V0C5 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC30.73■■■□□ 2.51
Usp48Q3V0C5 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC30.72■■■□□ 2.51
Usp48Q3V0C5 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC30.71■■■□□ 2.51
Usp48Q3V0C5 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Usp48Q3V0C5 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC30.7■■■□□ 2.51
Usp48Q3V0C5 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC30.69■■■□□ 2.5
Usp48Q3V0C5 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC30.69■■■□□ 2.5
Usp48Q3V0C5 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC30.69■■■□□ 2.5
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms