Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC33.29■■■□□ 2.92
Msh6P54276 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
Msh6P54276 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
Msh6P54276 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
Msh6P54276 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC33.26■■■□□ 2.92
Msh6P54276 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC33.26■■■□□ 2.91
Msh6P54276 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
Msh6P54276 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC33.24■■■□□ 2.91
Msh6P54276 Gm24970-201ENSMUST00000175582 82 ntBASIC33.22■■■□□ 2.91
Msh6P54276 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC33.21■■■□□ 2.91
Msh6P54276 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.9
Msh6P54276 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
Msh6P54276 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
Msh6P54276 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC33.17■■■□□ 2.9
Msh6P54276 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC33.17■■■□□ 2.9
Msh6P54276 Gm2415-204ENSMUST00000190235 2004 ntBASIC33.16■■■□□ 2.9
Msh6P54276 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC33.12■■■□□ 2.89
Msh6P54276 Gm5987-201ENSMUST00000196433 1151 ntBASIC33.11■■■□□ 2.89
Msh6P54276 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC33.11■■■□□ 2.89
Msh6P54276 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC33.09■■■□□ 2.89
Msh6P54276 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC33.08■■■□□ 2.89
Msh6P54276 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
Msh6P54276 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC33.07■■■□□ 2.88
Msh6P54276 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
Msh6P54276 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
Msh6P54276 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
Msh6P54276 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC33.06■■■□□ 2.88
Msh6P54276 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC33.06■■■□□ 2.88
Msh6P54276 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC33.05■■■□□ 2.88
Msh6P54276 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC33.04■■■□□ 2.88
Msh6P54276 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC33.04■■■□□ 2.88
Msh6P54276 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
Msh6P54276 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
Msh6P54276 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
Msh6P54276 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
Msh6P54276 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC32.97■■■□□ 2.87
Msh6P54276 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC32.96■■■□□ 2.87
Msh6P54276 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC32.95■■■□□ 2.87
Msh6P54276 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
Msh6P54276 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
Msh6P54276 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
Msh6P54276 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC32.91■■■□□ 2.86
Msh6P54276 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
Msh6P54276 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
Msh6P54276 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC32.88■■■□□ 2.85
Msh6P54276 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC32.87■■■□□ 2.85
Msh6P54276 Gm8503-201ENSMUST00000118131 455 ntBASIC32.85■■■□□ 2.85
Msh6P54276 Gm9939-201ENSMUST00000067161 1154 ntBASIC32.85■■■□□ 2.85
Msh6P54276 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC32.85■■■□□ 2.85
Msh6P54276 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Msh6P54276 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Msh6P54276 Gm6658-202ENSMUST00000209493 1885 ntBASIC32.85■■■□□ 2.85
Msh6P54276 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC32.82■■■□□ 2.84
Msh6P54276 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Msh6P54276 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC32.8■■■□□ 2.84
Msh6P54276 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC32.8■■■□□ 2.84
Msh6P54276 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC32.8■■■□□ 2.84
Msh6P54276 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
Msh6P54276 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Msh6P54276 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
Msh6P54276 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC32.74■■■□□ 2.83
Msh6P54276 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
Msh6P54276 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC32.72■■■□□ 2.83
Msh6P54276 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC32.72■■■□□ 2.83
Msh6P54276 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC32.71■■■□□ 2.83
Msh6P54276 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
Msh6P54276 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.82
Msh6P54276 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC32.7■■■□□ 2.82
Msh6P54276 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
Msh6P54276 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC32.69■■■□□ 2.82
Msh6P54276 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC32.68■■■□□ 2.82
Msh6P54276 Gm43863-201ENSMUST00000203822 1192 ntBASIC32.68■■■□□ 2.82
Msh6P54276 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Msh6P54276 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC32.67■■■□□ 2.82
Msh6P54276 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
Msh6P54276 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
Msh6P54276 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC32.64■■■□□ 2.82
Msh6P54276 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
Msh6P54276 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC32.63■■■□□ 2.81
Msh6P54276 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC32.61■■■□□ 2.81
Msh6P54276 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Msh6P54276 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
Msh6P54276 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
Msh6P54276 Gm6821-201ENSMUST00000107540 542 ntBASIC32.6■■■□□ 2.81
Msh6P54276 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC32.6■■■□□ 2.81
Msh6P54276 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC32.58■■■□□ 2.81
Msh6P54276 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Msh6P54276 Gm30346-201ENSMUST00000218641 1699 ntBASIC32.54■■■□□ 2.8
Msh6P54276 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Msh6P54276 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Msh6P54276 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC32.52■■■□□ 2.8
Msh6P54276 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
Msh6P54276 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC32.5■■■□□ 2.79
Msh6P54276 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
Msh6P54276 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC32.46■■■□□ 2.79
Msh6P54276 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC32.43■■■□□ 2.78
Msh6P54276 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
Msh6P54276 AC157572.2-201ENSMUST00000226970 908 ntBASIC32.42■■■□□ 2.78
Msh6P54276 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC32.4■■■□□ 2.78
Msh6P54276 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC32.4■■■□□ 2.78
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms