Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC24.08■■□□□ 1.45
Msx1P13297 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Msx1P13297 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Msx1P13297 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC24.06■■□□□ 1.44
Msx1P13297 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Msx1P13297 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
Msx1P13297 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Msx1P13297 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC24.04■■□□□ 1.44
Msx1P13297 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Msx1P13297 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Msx1P13297 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Msx1P13297 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC24.01■■□□□ 1.43
Msx1P13297 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Msx1P13297 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC23.99■■□□□ 1.43
Msx1P13297 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Msx1P13297 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Msx1P13297 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
Msx1P13297 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Msx1P13297 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Msx1P13297 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Msx1P13297 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC23.96■■□□□ 1.43
Msx1P13297 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Msx1P13297 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
Msx1P13297 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Msx1P13297 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC23.93■■□□□ 1.42
Msx1P13297 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC23.93■■□□□ 1.42
Msx1P13297 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Msx1P13297 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
Msx1P13297 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Msx1P13297 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
Msx1P13297 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Msx1P13297 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Msx1P13297 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC23.89■■□□□ 1.41
Msx1P13297 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC23.89■■□□□ 1.41
Msx1P13297 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Msx1P13297 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC23.89■■□□□ 1.41
Msx1P13297 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Msx1P13297 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Msx1P13297 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Msx1P13297 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC23.85■■□□□ 1.41
Msx1P13297 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Msx1P13297 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Msx1P13297 Gm24970-201ENSMUST00000175582 82 ntBASIC23.81■■□□□ 1.4
Msx1P13297 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
Msx1P13297 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Msx1P13297 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC23.79■■□□□ 1.4
Msx1P13297 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Msx1P13297 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Msx1P13297 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
Msx1P13297 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC23.76■■□□□ 1.39
Msx1P13297 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC23.75■■□□□ 1.39
Msx1P13297 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Msx1P13297 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC23.74■■□□□ 1.39
Msx1P13297 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Msx1P13297 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
Msx1P13297 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
Msx1P13297 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
Msx1P13297 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC23.72■■□□□ 1.39
Msx1P13297 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC23.72■■□□□ 1.39
Msx1P13297 AC153504.1-201ENSMUST00000218379 2290 ntBASIC23.71■■□□□ 1.39
Msx1P13297 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Msx1P13297 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Msx1P13297 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Msx1P13297 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
Msx1P13297 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Msx1P13297 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Msx1P13297 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Msx1P13297 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Msx1P13297 Gm9939-201ENSMUST00000067161 1154 ntBASIC23.66■■□□□ 1.38
Msx1P13297 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Msx1P13297 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Msx1P13297 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
Msx1P13297 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC23.64■■□□□ 1.37
Msx1P13297 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC23.63■■□□□ 1.37
Msx1P13297 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Msx1P13297 Gm8503-201ENSMUST00000118131 455 ntBASIC23.62■■□□□ 1.37
Msx1P13297 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Msx1P13297 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC23.61■■□□□ 1.37
Msx1P13297 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC23.6■■□□□ 1.37
Msx1P13297 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Msx1P13297 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Msx1P13297 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
Msx1P13297 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC23.59■■□□□ 1.37
Msx1P13297 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Msx1P13297 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC23.58■■□□□ 1.37
Msx1P13297 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
Msx1P13297 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Msx1P13297 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Msx1P13297 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC23.57■■□□□ 1.36
Msx1P13297 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Msx1P13297 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Msx1P13297 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Msx1P13297 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC23.56■■□□□ 1.36
Msx1P13297 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Msx1P13297 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Msx1P13297 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Msx1P13297 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Msx1P13297 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
Msx1P13297 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC23.51■■□□□ 1.35
Msx1P13297 Gm6821-201ENSMUST00000107540 542 ntBASIC23.51■■□□□ 1.35
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms