Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC32.65■■■□□ 2.82
Col4a1P02463 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC32.65■■■□□ 2.82
Col4a1P02463 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Col4a1P02463 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC32.63■■■□□ 2.81
Col4a1P02463 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC32.63■■■□□ 2.81
Col4a1P02463 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
Col4a1P02463 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Col4a1P02463 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC32.62■■■□□ 2.81
Col4a1P02463 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Col4a1P02463 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Col4a1P02463 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
Col4a1P02463 Gm24970-201ENSMUST00000175582 82 ntBASIC32.59■■■□□ 2.81
Col4a1P02463 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Col4a1P02463 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Col4a1P02463 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC32.53■■■□□ 2.8
Col4a1P02463 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Col4a1P02463 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
Col4a1P02463 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC32.51■■■□□ 2.8
Col4a1P02463 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
Col4a1P02463 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
Col4a1P02463 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
Col4a1P02463 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
Col4a1P02463 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC32.46■■■□□ 2.79
Col4a1P02463 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
Col4a1P02463 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC32.43■■■□□ 2.78
Col4a1P02463 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Col4a1P02463 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC32.41■■■□□ 2.78
Col4a1P02463 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
Col4a1P02463 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC32.39■■■□□ 2.78
Col4a1P02463 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.77
Col4a1P02463 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
Col4a1P02463 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Col4a1P02463 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC32.35■■■□□ 2.77
Col4a1P02463 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC32.35■■■□□ 2.77
Col4a1P02463 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Col4a1P02463 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
Col4a1P02463 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
Col4a1P02463 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC32.31■■■□□ 2.76
Col4a1P02463 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
Col4a1P02463 Gm43863-201ENSMUST00000203822 1192 ntBASIC32.28■■■□□ 2.76
Col4a1P02463 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
Col4a1P02463 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC32.27■■■□□ 2.76
Col4a1P02463 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC32.26■■■□□ 2.75
Col4a1P02463 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC32.25■■■□□ 2.75
Col4a1P02463 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC32.25■■■□□ 2.75
Col4a1P02463 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC32.24■■■□□ 2.75
Col4a1P02463 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC32.24■■■□□ 2.75
Col4a1P02463 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Col4a1P02463 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
Col4a1P02463 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
Col4a1P02463 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC32.23■■■□□ 2.75
Col4a1P02463 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
Col4a1P02463 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Col4a1P02463 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Col4a1P02463 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC32.21■■■□□ 2.75
Col4a1P02463 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
Col4a1P02463 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC32.21■■■□□ 2.75
Col4a1P02463 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Col4a1P02463 Gm2415-204ENSMUST00000190235 2004 ntBASIC32.17■■■□□ 2.74
Col4a1P02463 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
Col4a1P02463 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Col4a1P02463 Gm9939-201ENSMUST00000067161 1154 ntBASIC32.17■■■□□ 2.74
Col4a1P02463 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
Col4a1P02463 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC32.17■■■□□ 2.74
Col4a1P02463 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Col4a1P02463 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Col4a1P02463 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC32.15■■■□□ 2.74
Col4a1P02463 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Col4a1P02463 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC32.14■■■□□ 2.74
Col4a1P02463 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC32.12■■■□□ 2.73
Col4a1P02463 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Col4a1P02463 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Col4a1P02463 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC32.1■■■□□ 2.73
Col4a1P02463 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
Col4a1P02463 Gm30346-201ENSMUST00000218641 1699 ntBASIC32.09■■■□□ 2.73
Col4a1P02463 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC32.07■■■□□ 2.72
Col4a1P02463 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC32.07■■■□□ 2.72
Col4a1P02463 AC157572.2-201ENSMUST00000226970 908 ntBASIC32.07■■■□□ 2.72
Col4a1P02463 Gm8503-201ENSMUST00000118131 455 ntBASIC32.06■■■□□ 2.72
Col4a1P02463 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC32.05■■■□□ 2.72
Col4a1P02463 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC32.04■■■□□ 2.72
Col4a1P02463 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC32■■■□□ 2.71
Col4a1P02463 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
Col4a1P02463 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
Col4a1P02463 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC31.98■■■□□ 2.71
Col4a1P02463 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Col4a1P02463 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Col4a1P02463 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC31.95■■■□□ 2.7
Col4a1P02463 Gm5987-201ENSMUST00000196433 1151 ntBASIC31.95■■■□□ 2.7
Col4a1P02463 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
Col4a1P02463 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
Col4a1P02463 Gm6821-201ENSMUST00000107540 542 ntBASIC31.92■■■□□ 2.7
Col4a1P02463 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC31.91■■■□□ 2.7
Col4a1P02463 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC31.91■■■□□ 2.7
Col4a1P02463 Gm42809-201ENSMUST00000198429 1138 ntBASIC31.91■■■□□ 2.7
Col4a1P02463 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Col4a1P02463 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Col4a1P02463 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
Col4a1P02463 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Col4a1P02463 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC31.85■■■□□ 2.69
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms