Protein–RNA interactions for Protein: A0A140T8P8

Trbv17, T cell receptor beta, variable 17 (Fragment), mousemouse

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv17A0A140T8P8 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trbv17A0A140T8P8 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trbv17A0A140T8P8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trbv17A0A140T8P8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC19.14■□□□□ 0.65
Trbv17A0A140T8P8 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trbv17A0A140T8P8 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv17A0A140T8P8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv17A0A140T8P8 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv17A0A140T8P8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv17A0A140T8P8 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv17A0A140T8P8 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv17A0A140T8P8 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv17A0A140T8P8 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv17A0A140T8P8 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Trbv17A0A140T8P8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv17A0A140T8P8 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC19.1■□□□□ 0.65
Trbv17A0A140T8P8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
Trbv17A0A140T8P8 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trbv17A0A140T8P8 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC19.1■□□□□ 0.65
Trbv17A0A140T8P8 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv17A0A140T8P8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv17A0A140T8P8 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC19.09■□□□□ 0.65
Trbv17A0A140T8P8 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv17A0A140T8P8 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trbv17A0A140T8P8 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trbv17A0A140T8P8 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC19.06■□□□□ 0.64
Trbv17A0A140T8P8 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trbv17A0A140T8P8 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
Trbv17A0A140T8P8 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trbv17A0A140T8P8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC19.04■□□□□ 0.64
Trbv17A0A140T8P8 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv17A0A140T8P8 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC19.03■□□□□ 0.64
Trbv17A0A140T8P8 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trbv17A0A140T8P8 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trbv17A0A140T8P8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trbv17A0A140T8P8 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trbv17A0A140T8P8 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trbv17A0A140T8P8 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC19■□□□□ 0.63
Trbv17A0A140T8P8 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Trbv17A0A140T8P8 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC19■□□□□ 0.63
Trbv17A0A140T8P8 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trbv17A0A140T8P8 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trbv17A0A140T8P8 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC18.99■□□□□ 0.63
Trbv17A0A140T8P8 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Trbv17A0A140T8P8 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trbv17A0A140T8P8 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trbv17A0A140T8P8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trbv17A0A140T8P8 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trbv17A0A140T8P8 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trbv17A0A140T8P8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trbv17A0A140T8P8 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trbv17A0A140T8P8 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Trbv17A0A140T8P8 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trbv17A0A140T8P8 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Trbv17A0A140T8P8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv17A0A140T8P8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv17A0A140T8P8 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv17A0A140T8P8 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Trbv17A0A140T8P8 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Trbv17A0A140T8P8 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
Trbv17A0A140T8P8 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trbv17A0A140T8P8 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trbv17A0A140T8P8 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trbv17A0A140T8P8 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Trbv17A0A140T8P8 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trbv17A0A140T8P8 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trbv17A0A140T8P8 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trbv17A0A140T8P8 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Trbv17A0A140T8P8 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trbv17A0A140T8P8 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.87■□□□□ 0.61
Trbv17A0A140T8P8 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC18.87■□□□□ 0.61
Trbv17A0A140T8P8 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Trbv17A0A140T8P8 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv17A0A140T8P8 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv17A0A140T8P8 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv17A0A140T8P8 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trbv17A0A140T8P8 Gm30346-201ENSMUST00000218641 1699 ntBASIC18.85■□□□□ 0.61
Trbv17A0A140T8P8 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trbv17A0A140T8P8 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trbv17A0A140T8P8 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trbv17A0A140T8P8 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Trbv17A0A140T8P8 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trbv17A0A140T8P8 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv17A0A140T8P8 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Trbv17A0A140T8P8 Zfp131-205ENSMUST00000223812 663 ntBASIC18.82■□□□□ 0.6
Trbv17A0A140T8P8 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv17A0A140T8P8 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
Trbv17A0A140T8P8 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trbv17A0A140T8P8 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trbv17A0A140T8P8 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Trbv17A0A140T8P8 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trbv17A0A140T8P8 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trbv17A0A140T8P8 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trbv17A0A140T8P8 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trbv17A0A140T8P8 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC18.8■□□□□ 0.6
Trbv17A0A140T8P8 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trbv17A0A140T8P8 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC18.79■□□□□ 0.6
Trbv17A0A140T8P8 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trbv17A0A140T8P8 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trbv17A0A140T8P8 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms