Protein–RNA interactions for Protein: A0A0B4J1H3

Trbv16, T cell receptor beta, variable 16 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv16A0A0B4J1H3 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv16A0A0B4J1H3 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Trbv16A0A0B4J1H3 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC18.28■□□□□ 0.52
Trbv16A0A0B4J1H3 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
Trbv16A0A0B4J1H3 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv16A0A0B4J1H3 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
Trbv16A0A0B4J1H3 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv16A0A0B4J1H3 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv16A0A0B4J1H3 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv16A0A0B4J1H3 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC18.26■□□□□ 0.51
Trbv16A0A0B4J1H3 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC18.25■□□□□ 0.51
Trbv16A0A0B4J1H3 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
Trbv16A0A0B4J1H3 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Trbv16A0A0B4J1H3 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trbv16A0A0B4J1H3 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Trbv16A0A0B4J1H3 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv16A0A0B4J1H3 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv16A0A0B4J1H3 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Trbv16A0A0B4J1H3 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
Trbv16A0A0B4J1H3 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv16A0A0B4J1H3 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
Trbv16A0A0B4J1H3 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv16A0A0B4J1H3 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC18.21■□□□□ 0.51
Trbv16A0A0B4J1H3 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trbv16A0A0B4J1H3 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trbv16A0A0B4J1H3 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trbv16A0A0B4J1H3 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv16A0A0B4J1H3 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv16A0A0B4J1H3 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv16A0A0B4J1H3 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv16A0A0B4J1H3 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv16A0A0B4J1H3 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC18.17■□□□□ 0.5
Trbv16A0A0B4J1H3 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trbv16A0A0B4J1H3 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trbv16A0A0B4J1H3 Gm30346-201ENSMUST00000218641 1699 ntBASIC18.15■□□□□ 0.5
Trbv16A0A0B4J1H3 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trbv16A0A0B4J1H3 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Trbv16A0A0B4J1H3 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trbv16A0A0B4J1H3 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trbv16A0A0B4J1H3 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trbv16A0A0B4J1H3 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trbv16A0A0B4J1H3 Amer2-203ENSMUST00000225247 2662 ntBASIC18.12■□□□□ 0.49
Trbv16A0A0B4J1H3 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trbv16A0A0B4J1H3 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Trbv16A0A0B4J1H3 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Trbv16A0A0B4J1H3 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trbv16A0A0B4J1H3 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trbv16A0A0B4J1H3 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trbv16A0A0B4J1H3 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv16A0A0B4J1H3 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv16A0A0B4J1H3 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv16A0A0B4J1H3 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trbv16A0A0B4J1H3 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC18.1■□□□□ 0.49
Trbv16A0A0B4J1H3 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC18.09■□□□□ 0.49
Trbv16A0A0B4J1H3 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trbv16A0A0B4J1H3 Fezf2-202ENSMUST00000224023 1917 ntBASIC18.09■□□□□ 0.49
Trbv16A0A0B4J1H3 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trbv16A0A0B4J1H3 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trbv16A0A0B4J1H3 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trbv16A0A0B4J1H3 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv16A0A0B4J1H3 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv16A0A0B4J1H3 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv16A0A0B4J1H3 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv16A0A0B4J1H3 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv16A0A0B4J1H3 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv16A0A0B4J1H3 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC18.05■□□□□ 0.48
Trbv16A0A0B4J1H3 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Trbv16A0A0B4J1H3 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv16A0A0B4J1H3 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18.04■□□□□ 0.48
Trbv16A0A0B4J1H3 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv16A0A0B4J1H3 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC18.04■□□□□ 0.48
Trbv16A0A0B4J1H3 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv16A0A0B4J1H3 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv16A0A0B4J1H3 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Trbv16A0A0B4J1H3 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC18.02■□□□□ 0.48
Trbv16A0A0B4J1H3 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trbv16A0A0B4J1H3 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC18.01■□□□□ 0.47
Trbv16A0A0B4J1H3 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trbv16A0A0B4J1H3 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Trbv16A0A0B4J1H3 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trbv16A0A0B4J1H3 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trbv16A0A0B4J1H3 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trbv16A0A0B4J1H3 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv16A0A0B4J1H3 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv16A0A0B4J1H3 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Trbv16A0A0B4J1H3 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trbv16A0A0B4J1H3 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC17.97■□□□□ 0.47
Trbv16A0A0B4J1H3 Peli2-204ENSMUST00000226513 1320 ntBASIC17.96■□□□□ 0.46
Trbv16A0A0B4J1H3 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv16A0A0B4J1H3 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv16A0A0B4J1H3 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv16A0A0B4J1H3 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv16A0A0B4J1H3 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv16A0A0B4J1H3 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv16A0A0B4J1H3 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv16A0A0B4J1H3 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv16A0A0B4J1H3 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC17.94■□□□□ 0.46
Trbv16A0A0B4J1H3 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trbv16A0A0B4J1H3 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv16A0A0B4J1H3 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 8.7 ms