Protein–RNA interactions for Protein: Q6P5D8

Smchd1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, mousemouse

Known RBP Predictions only

Length 2,007 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smchd1Q6P5D8 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Smchd1Q6P5D8 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
Smchd1Q6P5D8 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC21.27■■□□□ 1
Smchd1Q6P5D8 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Smchd1Q6P5D8 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Smchd1Q6P5D8 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Smchd1Q6P5D8 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Smchd1Q6P5D8 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Smchd1Q6P5D8 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smchd1Q6P5D8 Gm6211-202ENSMUST00000167849 925 ntBASIC21.26■□□□□ 0.99
Smchd1Q6P5D8 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC21.26■□□□□ 0.99
Smchd1Q6P5D8 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smchd1Q6P5D8 Gm6365-201ENSMUST00000054711 744 ntBASIC21.26■□□□□ 0.99
Smchd1Q6P5D8 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Smchd1Q6P5D8 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smchd1Q6P5D8 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC21.26■□□□□ 0.99
Smchd1Q6P5D8 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Smchd1Q6P5D8 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smchd1Q6P5D8 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smchd1Q6P5D8 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smchd1Q6P5D8 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smchd1Q6P5D8 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Smchd1Q6P5D8 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smchd1Q6P5D8 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Smchd1Q6P5D8 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smchd1Q6P5D8 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Smchd1Q6P5D8 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smchd1Q6P5D8 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Smchd1Q6P5D8 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smchd1Q6P5D8 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
Smchd1Q6P5D8 Gm12669-201ENSMUST00000122162 1009 ntBASIC21.24■□□□□ 0.99
Smchd1Q6P5D8 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Smchd1Q6P5D8 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
Smchd1Q6P5D8 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Smchd1Q6P5D8 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Smchd1Q6P5D8 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Smchd1Q6P5D8 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Smchd1Q6P5D8 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Smchd1Q6P5D8 Gm4968-201ENSMUST00000071458 858 ntBASIC21.23■□□□□ 0.99
Smchd1Q6P5D8 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Smchd1Q6P5D8 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Smchd1Q6P5D8 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Smchd1Q6P5D8 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC21.23■□□□□ 0.99
Smchd1Q6P5D8 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smchd1Q6P5D8 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smchd1Q6P5D8 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC21.22■□□□□ 0.99
Smchd1Q6P5D8 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smchd1Q6P5D8 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
Smchd1Q6P5D8 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Smchd1Q6P5D8 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Smchd1Q6P5D8 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Smchd1Q6P5D8 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smchd1Q6P5D8 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smchd1Q6P5D8 Mir5133-201ENSMUST00000174955 77 ntBASIC21.21■□□□□ 0.99
Smchd1Q6P5D8 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smchd1Q6P5D8 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smchd1Q6P5D8 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smchd1Q6P5D8 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Smchd1Q6P5D8 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smchd1Q6P5D8 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC21.21■□□□□ 0.99
Smchd1Q6P5D8 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smchd1Q6P5D8 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smchd1Q6P5D8 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Smchd1Q6P5D8 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Smchd1Q6P5D8 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Smchd1Q6P5D8 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Smchd1Q6P5D8 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Smchd1Q6P5D8 Gm12441-201ENSMUST00000121806 588 ntBASIC21.2■□□□□ 0.98
Smchd1Q6P5D8 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Smchd1Q6P5D8 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC21.2■□□□□ 0.98
Smchd1Q6P5D8 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Gm26524-201ENSMUST00000192339 390 ntBASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Smchd1Q6P5D8 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC21.18■□□□□ 0.98
Smchd1Q6P5D8 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smchd1Q6P5D8 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smchd1Q6P5D8 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smchd1Q6P5D8 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smchd1Q6P5D8 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC21.18■□□□□ 0.98
Smchd1Q6P5D8 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smchd1Q6P5D8 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smchd1Q6P5D8 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Smchd1Q6P5D8 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smchd1Q6P5D8 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC21.18■□□□□ 0.98
Smchd1Q6P5D8 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Smchd1Q6P5D8 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC21.17■□□□□ 0.98
Smchd1Q6P5D8 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC21.17■□□□□ 0.98
Smchd1Q6P5D8 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Smchd1Q6P5D8 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Smchd1Q6P5D8 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms