Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Gm8770-201ENSMUST00000121113 1109 ntBASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Sh3rf1Q69ZI1 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Cdkn3-203ENSMUST00000227149 1952 ntBASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Gm7143-201ENSMUST00000222811 859 ntBASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Sh3rf1Q69ZI1 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Gm8495-201ENSMUST00000188740 694 ntBASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Gm8493-201ENSMUST00000196881 489 ntBASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sh3rf1Q69ZI1 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Sh3rf1Q69ZI1 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Sh3rf1Q69ZI1 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Sh3rf1Q69ZI1 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Sh3rf1Q69ZI1 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
Sh3rf1Q69ZI1 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Sh3rf1Q69ZI1 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Sh3rf1Q69ZI1 Gm18284-201ENSMUST00000172604 624 ntBASIC19.45■□□□□ 0.7
Sh3rf1Q69ZI1 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
Sh3rf1Q69ZI1 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Sh3rf1Q69ZI1 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Gm21168-201ENSMUST00000199646 1096 ntBASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
Sh3rf1Q69ZI1 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Sh3rf1Q69ZI1 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sh3rf1Q69ZI1 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sh3rf1Q69ZI1 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Sh3rf1Q69ZI1 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC19.43■□□□□ 0.7
Sh3rf1Q69ZI1 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC19.43■□□□□ 0.7
Sh3rf1Q69ZI1 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC19.43■□□□□ 0.7
Sh3rf1Q69ZI1 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sh3rf1Q69ZI1 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 Gm43759-201ENSMUST00000196925 1261 ntBASIC19.42■□□□□ 0.7
Sh3rf1Q69ZI1 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms