Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.31■■□□□ 1
Msh3P13705 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Msh3P13705 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Msh3P13705 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC21.3■■□□□ 1
Msh3P13705 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Msh3P13705 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Msh3P13705 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Msh3P13705 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Msh3P13705 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Msh3P13705 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Msh3P13705 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Msh3P13705 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Msh3P13705 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Msh3P13705 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Msh3P13705 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Msh3P13705 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Msh3P13705 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Msh3P13705 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Msh3P13705 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
Msh3P13705 Gm40848-201ENSMUST00000221998 324 ntBASIC21.29■■□□□ 1
Msh3P13705 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Msh3P13705 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Msh3P13705 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC21.29■■□□□ 1
Msh3P13705 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC21.29■■□□□ 1
Msh3P13705 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC21.29■■□□□ 1
Msh3P13705 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC21.28■■□□□ 1
Msh3P13705 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC21.28■■□□□ 1
Msh3P13705 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
Msh3P13705 Gm21168-201ENSMUST00000199646 1096 ntBASIC21.28■■□□□ 1
Msh3P13705 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Gm18688-201ENSMUST00000204695 1859 ntBASIC21.28■■□□□ 1
Msh3P13705 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Msh3P13705 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Msh3P13705 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Msh3P13705 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Msh3P13705 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC21.27■■□□□ 1
Msh3P13705 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC21.27■■□□□ 1
Msh3P13705 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Msh3P13705 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.27■■□□□ 1
Msh3P13705 Gm14281-201ENSMUST00000121700 1294 ntBASIC21.27■■□□□ 1
Msh3P13705 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Msh3P13705 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC21.27■■□□□ 1
Msh3P13705 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Msh3P13705 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC21.27■■□□□ 1
Msh3P13705 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Msh3P13705 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Msh3P13705 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Msh3P13705 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Msh3P13705 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Msh3P13705 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Msh3P13705 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Msh3P13705 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
Msh3P13705 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Msh3P13705 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Msh3P13705 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Msh3P13705 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh3P13705 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh3P13705 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Msh3P13705 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh3P13705 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh3P13705 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh3P13705 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.25■□□□□ 0.99
Msh3P13705 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Msh3P13705 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh3P13705 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh3P13705 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh3P13705 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh3P13705 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Msh3P13705 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Msh3P13705 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Msh3P13705 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Msh3P13705 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh3P13705 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC21.24■□□□□ 0.99
Msh3P13705 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Msh3P13705 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh3P13705 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh3P13705 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Msh3P13705 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh3P13705 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Msh3P13705 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh3P13705 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Msh3P13705 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Msh3P13705 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Msh3P13705 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh3P13705 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh3P13705 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
Msh3P13705 Gm43060-201ENSMUST00000200621 289 ntBASIC21.23■□□□□ 0.99
Msh3P13705 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Msh3P13705 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 133.9 ms