Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sh3rf1Q69ZI1 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sh3rf1Q69ZI1 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Sh3rf1Q69ZI1 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Sh3rf1Q69ZI1 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Sh3rf1Q69ZI1 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Sh3rf1Q69ZI1 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sh3rf1Q69ZI1 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sh3rf1Q69ZI1 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Sh3rf1Q69ZI1 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Sh3rf1Q69ZI1 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sh3rf1Q69ZI1 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Sh3rf1Q69ZI1 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Sh3rf1Q69ZI1 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Sh3rf1Q69ZI1 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
Sh3rf1Q69ZI1 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Sh3rf1Q69ZI1 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Sh3rf1Q69ZI1 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Sh3rf1Q69ZI1 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Sh3rf1Q69ZI1 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Mir7075-201ENSMUST00000184187 82 ntBASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Sh3rf1Q69ZI1 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 Gm2011-201ENSMUST00000203124 1263 ntBASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 Krt8-ps-201ENSMUST00000208495 945 ntBASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Sh3rf1Q69ZI1 AC166356.1-201ENSMUST00000228236 1426 ntBASIC19.52■□□□□ 0.72
Sh3rf1Q69ZI1 Flvcr1-202ENSMUST00000191946 1216 ntBASIC19.52■□□□□ 0.72
Sh3rf1Q69ZI1 Gm43017-201ENSMUST00000198296 752 ntBASIC19.52■□□□□ 0.72
Sh3rf1Q69ZI1 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Sh3rf1Q69ZI1 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Sh3rf1Q69ZI1 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Sh3rf1Q69ZI1 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Sh3rf1Q69ZI1 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Sh3rf1Q69ZI1 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Gm10657-201ENSMUST00000193528 1031 ntBASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Sh3rf1Q69ZI1 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Sh3rf1Q69ZI1 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Sh3rf1Q69ZI1 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Sh3rf1Q69ZI1 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.5■□□□□ 0.71
Sh3rf1Q69ZI1 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.5■□□□□ 0.71
Sh3rf1Q69ZI1 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Sh3rf1Q69ZI1 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Sh3rf1Q69ZI1 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Sh3rf1Q69ZI1 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Sh3rf1Q69ZI1 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Sh3rf1Q69ZI1 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Sh3rf1Q69ZI1 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 151.5 ms