Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Sh3rf1Q69ZI1 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Sh3rf1Q69ZI1 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Sh3rf1Q69ZI1 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC19.75■□□□□ 0.75
Sh3rf1Q69ZI1 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
Sh3rf1Q69ZI1 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Sh3rf1Q69ZI1 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Sh3rf1Q69ZI1 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Sh3rf1Q69ZI1 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Sh3rf1Q69ZI1 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Sh3rf1Q69ZI1 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Sh3rf1Q69ZI1 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Sh3rf1Q69ZI1 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Sh3rf1Q69ZI1 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Sh3rf1Q69ZI1 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC19.74■□□□□ 0.75
Sh3rf1Q69ZI1 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Sh3rf1Q69ZI1 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Sh3rf1Q69ZI1 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sh3rf1Q69ZI1 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Sh3rf1Q69ZI1 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC19.73■□□□□ 0.75
Sh3rf1Q69ZI1 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sh3rf1Q69ZI1 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sh3rf1Q69ZI1 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sh3rf1Q69ZI1 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sh3rf1Q69ZI1 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Sh3rf1Q69ZI1 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf1Q69ZI1 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf1Q69ZI1 Gm9870-201ENSMUST00000063874 645 ntBASIC19.72■□□□□ 0.75
Sh3rf1Q69ZI1 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf1Q69ZI1 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf1Q69ZI1 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf1Q69ZI1 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf1Q69ZI1 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf1Q69ZI1 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf1Q69ZI1 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf1Q69ZI1 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf1Q69ZI1 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf1Q69ZI1 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf1Q69ZI1 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf1Q69ZI1 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf1Q69ZI1 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf1Q69ZI1 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf1Q69ZI1 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf1Q69ZI1 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC19.71■□□□□ 0.75
Sh3rf1Q69ZI1 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf1Q69ZI1 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf1Q69ZI1 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf1Q69ZI1 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf1Q69ZI1 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf1Q69ZI1 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC19.68■□□□□ 0.74
Sh3rf1Q69ZI1 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf1Q69ZI1 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf1Q69ZI1 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Sh3rf1Q69ZI1 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf1Q69ZI1 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf1Q69ZI1 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sh3rf1Q69ZI1 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC19.67■□□□□ 0.74
Sh3rf1Q69ZI1 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Sh3rf1Q69ZI1 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sh3rf1Q69ZI1 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sh3rf1Q69ZI1 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sh3rf1Q69ZI1 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sh3rf1Q69ZI1 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sh3rf1Q69ZI1 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Sh3rf1Q69ZI1 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sh3rf1Q69ZI1 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sh3rf1Q69ZI1 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sh3rf1Q69ZI1 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sh3rf1Q69ZI1 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sh3rf1Q69ZI1 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 58.3 ms