Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Msh3P13705 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Msh3P13705 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Msh3P13705 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC21.6■■□□□ 1.05
Msh3P13705 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Msh3P13705 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Msh3P13705 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Msh3P13705 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Msh3P13705 Gm6139-201ENSMUST00000079261 882 ntBASIC21.6■■□□□ 1.05
Msh3P13705 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Msh3P13705 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Msh3P13705 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Msh3P13705 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC21.59■■□□□ 1.05
Msh3P13705 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Msh3P13705 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Msh3P13705 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Msh3P13705 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Msh3P13705 Smad6-203ENSMUST00000179458 273 ntBASIC21.59■■□□□ 1.05
Msh3P13705 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Msh3P13705 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Msh3P13705 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Msh3P13705 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
Msh3P13705 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Msh3P13705 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Msh3P13705 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Msh3P13705 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
Msh3P13705 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Msh3P13705 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.58■■□□□ 1.05
Msh3P13705 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC21.58■■□□□ 1.05
Msh3P13705 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Msh3P13705 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Msh3P13705 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Msh3P13705 Gm45640-201ENSMUST00000210665 1896 ntBASIC21.58■■□□□ 1.04
Msh3P13705 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Msh3P13705 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Msh3P13705 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Msh3P13705 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Msh3P13705 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
Msh3P13705 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
Msh3P13705 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC21.57■■□□□ 1.04
Msh3P13705 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC21.57■■□□□ 1.04
Msh3P13705 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
Msh3P13705 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Msh3P13705 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Msh3P13705 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Msh3P13705 Gm8493-201ENSMUST00000196881 489 ntBASIC21.56■■□□□ 1.04
Msh3P13705 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC21.56■■□□□ 1.04
Msh3P13705 Gm45417-201ENSMUST00000209533 758 ntBASIC21.56■■□□□ 1.04
Msh3P13705 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Msh3P13705 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Msh3P13705 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Msh3P13705 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Msh3P13705 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Msh3P13705 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Msh3P13705 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Msh3P13705 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Msh3P13705 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Msh3P13705 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Msh3P13705 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC21.55■■□□□ 1.04
Msh3P13705 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Msh3P13705 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
Msh3P13705 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Msh3P13705 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Msh3P13705 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msh3P13705 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msh3P13705 Gm10571-201ENSMUST00000097869 1638 ntBASIC21.54■■□□□ 1.04
Msh3P13705 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msh3P13705 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msh3P13705 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Msh3P13705 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msh3P13705 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC21.53■■□□□ 1.04
Msh3P13705 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Msh3P13705 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Msh3P13705 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Msh3P13705 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Msh3P13705 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Msh3P13705 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Msh3P13705 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Msh3P13705 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Msh3P13705 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Msh3P13705 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Msh3P13705 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Msh3P13705 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Msh3P13705 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Msh3P13705 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Msh3P13705 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Msh3P13705 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Msh3P13705 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Msh3P13705 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.51■■□□□ 1.03
Msh3P13705 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Msh3P13705 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.51■■□□□ 1.03
Msh3P13705 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
Msh3P13705 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.51■■□□□ 1.03
Msh3P13705 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Msh3P13705 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Msh3P13705 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Msh3P13705 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Msh3P13705 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Msh3P13705 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC21.5■■□□□ 1.03
Msh3P13705 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms