Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC17.73■□□□□ 0.43
H2afb1S4R1E0 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
H2afb1S4R1E0 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
H2afb1S4R1E0 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
H2afb1S4R1E0 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
H2afb1S4R1E0 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Mir6236-201ENSMUST00000184437 123 ntBASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Gm9870-201ENSMUST00000063874 645 ntBASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
H2afb1S4R1E0 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
H2afb1S4R1E0 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC17.71■□□□□ 0.42
H2afb1S4R1E0 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
H2afb1S4R1E0 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
H2afb1S4R1E0 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
H2afb1S4R1E0 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
H2afb1S4R1E0 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
H2afb1S4R1E0 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
H2afb1S4R1E0 Dapk1-207ENSMUST00000226059 5009 ntBASIC17.7■□□□□ 0.42
H2afb1S4R1E0 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
H2afb1S4R1E0 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
H2afb1S4R1E0 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
H2afb1S4R1E0 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
H2afb1S4R1E0 Gm5812-201ENSMUST00000061073 957 ntBASIC17.69■□□□□ 0.42
H2afb1S4R1E0 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
H2afb1S4R1E0 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
H2afb1S4R1E0 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
H2afb1S4R1E0 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
H2afb1S4R1E0 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
H2afb1S4R1E0 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
H2afb1S4R1E0 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Gm15546-201ENSMUST00000122095 826 ntBASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Gm43909-201ENSMUST00000203443 1876 ntBASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
H2afb1S4R1E0 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
H2afb1S4R1E0 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H2afb1S4R1E0 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H2afb1S4R1E0 Gm43530-201ENSMUST00000195920 274 ntBASIC17.67■□□□□ 0.42
H2afb1S4R1E0 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H2afb1S4R1E0 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H2afb1S4R1E0 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H2afb1S4R1E0 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
H2afb1S4R1E0 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H2afb1S4R1E0 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
H2afb1S4R1E0 Hsf1-204ENSMUST00000226872 2104 ntBASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Etf1-202ENSMUST00000180351 108 ntBASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
H2afb1S4R1E0 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
H2afb1S4R1E0 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
H2afb1S4R1E0 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
H2afb1S4R1E0 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms