Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Serp2-204ENSMUST00000228055 705 ntBASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sh3rf1Q69ZI1 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Sh3rf1Q69ZI1 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Sh3rf1Q69ZI1 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC19.85■□□□□ 0.77
Sh3rf1Q69ZI1 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.85■□□□□ 0.77
Sh3rf1Q69ZI1 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Sh3rf1Q69ZI1 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Sh3rf1Q69ZI1 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Sh3rf1Q69ZI1 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Sh3rf1Q69ZI1 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Sh3rf1Q69ZI1 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Sh3rf1Q69ZI1 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Sh3rf1Q69ZI1 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.84■□□□□ 0.77
Sh3rf1Q69ZI1 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sh3rf1Q69ZI1 Gm43909-201ENSMUST00000203443 1876 ntBASIC19.84■□□□□ 0.77
Sh3rf1Q69ZI1 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Sh3rf1Q69ZI1 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.83■□□□□ 0.77
Sh3rf1Q69ZI1 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Sh3rf1Q69ZI1 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC19.83■□□□□ 0.77
Sh3rf1Q69ZI1 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Sh3rf1Q69ZI1 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.83■□□□□ 0.76
Sh3rf1Q69ZI1 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Sh3rf1Q69ZI1 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Sh3rf1Q69ZI1 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Sh3rf1Q69ZI1 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sh3rf1Q69ZI1 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Sh3rf1Q69ZI1 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sh3rf1Q69ZI1 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Sh3rf1Q69ZI1 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.82■□□□□ 0.76
Sh3rf1Q69ZI1 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sh3rf1Q69ZI1 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Golph3-205ENSMUST00000228671 2842 ntBASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sh3rf1Q69ZI1 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
Sh3rf1Q69ZI1 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Sh3rf1Q69ZI1 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Sh3rf1Q69ZI1 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC19.8■□□□□ 0.76
Sh3rf1Q69ZI1 Gm9207-201ENSMUST00000198773 1115 ntBASIC19.8■□□□□ 0.76
Sh3rf1Q69ZI1 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Sh3rf1Q69ZI1 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Sh3rf1Q69ZI1 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Sh3rf1Q69ZI1 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Sh3rf1Q69ZI1 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.79■□□□□ 0.76
Sh3rf1Q69ZI1 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Sh3rf1Q69ZI1 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC19.79■□□□□ 0.76
Sh3rf1Q69ZI1 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.79■□□□□ 0.76
Sh3rf1Q69ZI1 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Sh3rf1Q69ZI1 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Sh3rf1Q69ZI1 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC19.79■□□□□ 0.76
Sh3rf1Q69ZI1 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Sh3rf1Q69ZI1 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Sh3rf1Q69ZI1 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sh3rf1Q69ZI1 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sh3rf1Q69ZI1 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sh3rf1Q69ZI1 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sh3rf1Q69ZI1 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Sh3rf1Q69ZI1 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sh3rf1Q69ZI1 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sh3rf1Q69ZI1 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.77■□□□□ 0.76
Sh3rf1Q69ZI1 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
Sh3rf1Q69ZI1 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Sh3rf1Q69ZI1 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Sh3rf1Q69ZI1 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Sh3rf1Q69ZI1 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC19.77■□□□□ 0.76
Sh3rf1Q69ZI1 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Sh3rf1Q69ZI1 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Sh3rf1Q69ZI1 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Sh3rf1Q69ZI1 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Sh3rf1Q69ZI1 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Sh3rf1Q69ZI1 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Sh3rf1Q69ZI1 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
Sh3rf1Q69ZI1 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.76■□□□□ 0.75
Sh3rf1Q69ZI1 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Sh3rf1Q69ZI1 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.76■□□□□ 0.75
Sh3rf1Q69ZI1 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Sh3rf1Q69ZI1 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Sh3rf1Q69ZI1 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms