Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cln3Q61124 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.74■■□□□ 1.07
Cln3Q61124 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cln3Q61124 Dmtn-209ENSMUST00000228295 2572 ntBASIC21.74■■□□□ 1.07
Cln3Q61124 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Cln3Q61124 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Cln3Q61124 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cln3Q61124 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Cln3Q61124 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.74■■□□□ 1.07
Cln3Q61124 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Cln3Q61124 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Cln3Q61124 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Cln3Q61124 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Cln3Q61124 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Cln3Q61124 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Cln3Q61124 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cln3Q61124 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cln3Q61124 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Cln3Q61124 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Cln3Q61124 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cln3Q61124 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cln3Q61124 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC21.73■■□□□ 1.07
Cln3Q61124 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC21.73■■□□□ 1.07
Cln3Q61124 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cln3Q61124 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cln3Q61124 Gm4968-201ENSMUST00000071458 858 ntBASIC21.73■■□□□ 1.07
Cln3Q61124 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Cln3Q61124 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cln3Q61124 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cln3Q61124 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cln3Q61124 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cln3Q61124 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Cln3Q61124 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
Cln3Q61124 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
Cln3Q61124 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cln3Q61124 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Cln3Q61124 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cln3Q61124 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cln3Q61124 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cln3Q61124 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cln3Q61124 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Cln3Q61124 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cln3Q61124 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cln3Q61124 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cln3Q61124 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC21.71■■□□□ 1.07
Cln3Q61124 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cln3Q61124 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Cln3Q61124 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
Cln3Q61124 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Cln3Q61124 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
Cln3Q61124 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cln3Q61124 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Cln3Q61124 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cln3Q61124 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Cln3Q61124 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Cln3Q61124 Gm13148-201ENSMUST00000118892 745 ntBASIC21.7■■□□□ 1.06
Cln3Q61124 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
Cln3Q61124 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Cln3Q61124 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cln3Q61124 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cln3Q61124 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cln3Q61124 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cln3Q61124 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Cln3Q61124 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Cln3Q61124 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Cln3Q61124 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC21.69■■□□□ 1.06
Cln3Q61124 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC21.69■■□□□ 1.06
Cln3Q61124 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cln3Q61124 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cln3Q61124 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cln3Q61124 Nespas-201ENSMUST00000143738 1083 ntBASIC21.68■■□□□ 1.06
Cln3Q61124 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cln3Q61124 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cln3Q61124 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cln3Q61124 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cln3Q61124 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cln3Q61124 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cln3Q61124 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Cln3Q61124 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cln3Q61124 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
Cln3Q61124 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
Cln3Q61124 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cln3Q61124 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cln3Q61124 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Cln3Q61124 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC21.67■■□□□ 1.06
Cln3Q61124 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC21.67■■□□□ 1.06
Cln3Q61124 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cln3Q61124 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Cln3Q61124 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC21.67■■□□□ 1.06
Cln3Q61124 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cln3Q61124 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cln3Q61124 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC21.66■■□□□ 1.06
Cln3Q61124 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cln3Q61124 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cln3Q61124 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cln3Q61124 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cln3Q61124 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC21.66■■□□□ 1.06
Cln3Q61124 Gm6420-201ENSMUST00000193885 723 ntBASIC21.66■■□□□ 1.06
Cln3Q61124 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cln3Q61124 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 305.4 ms