Protein–RNA interactions for Protein: Q3TL54

Trim43a, Tripartite motif-containing protein 43A, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim43aQ3TL54 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim43aQ3TL54 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Trim43aQ3TL54 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim43aQ3TL54 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim43aQ3TL54 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim43aQ3TL54 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim43aQ3TL54 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim43aQ3TL54 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim43aQ3TL54 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim43aQ3TL54 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.77■□□□□ 0.92
Trim43aQ3TL54 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim43aQ3TL54 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim43aQ3TL54 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim43aQ3TL54 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.77■□□□□ 0.92
Trim43aQ3TL54 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim43aQ3TL54 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim43aQ3TL54 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim43aQ3TL54 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
Trim43aQ3TL54 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Trim43aQ3TL54 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Trim43aQ3TL54 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Trim43aQ3TL54 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim43aQ3TL54 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim43aQ3TL54 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim43aQ3TL54 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Trim43aQ3TL54 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim43aQ3TL54 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.76■□□□□ 0.91
Trim43aQ3TL54 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Trim43aQ3TL54 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim43aQ3TL54 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim43aQ3TL54 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.75■□□□□ 0.91
Trim43aQ3TL54 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim43aQ3TL54 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.75■□□□□ 0.91
Trim43aQ3TL54 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim43aQ3TL54 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim43aQ3TL54 Gm9959-201ENSMUST00000068277 390 ntBASIC20.75■□□□□ 0.91
Trim43aQ3TL54 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Trim43aQ3TL54 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Trim43aQ3TL54 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim43aQ3TL54 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim43aQ3TL54 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim43aQ3TL54 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.74■□□□□ 0.91
Trim43aQ3TL54 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim43aQ3TL54 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC20.74■□□□□ 0.91
Trim43aQ3TL54 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trim43aQ3TL54 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim43aQ3TL54 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim43aQ3TL54 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim43aQ3TL54 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim43aQ3TL54 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim43aQ3TL54 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim43aQ3TL54 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.73■□□□□ 0.91
Trim43aQ3TL54 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Trim43aQ3TL54 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim43aQ3TL54 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Trim43aQ3TL54 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Trim43aQ3TL54 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Trim43aQ3TL54 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Trim43aQ3TL54 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim43aQ3TL54 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim43aQ3TL54 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Trim43aQ3TL54 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim43aQ3TL54 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Trim43aQ3TL54 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim43aQ3TL54 Gm14117-201ENSMUST00000122417 843 ntBASIC20.72■□□□□ 0.91
Trim43aQ3TL54 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.72■□□□□ 0.91
Trim43aQ3TL54 Etf1-202ENSMUST00000180351 108 ntBASIC20.72■□□□□ 0.91
Trim43aQ3TL54 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.72■□□□□ 0.91
Trim43aQ3TL54 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim43aQ3TL54 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim43aQ3TL54 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim43aQ3TL54 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Trim43aQ3TL54 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43aQ3TL54 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43aQ3TL54 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43aQ3TL54 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43aQ3TL54 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43aQ3TL54 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43aQ3TL54 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Trim43aQ3TL54 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43aQ3TL54 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC20.71■□□□□ 0.91
Trim43aQ3TL54 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43aQ3TL54 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim43aQ3TL54 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Trim43aQ3TL54 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43aQ3TL54 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43aQ3TL54 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43aQ3TL54 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.7■□□□□ 0.9
Trim43aQ3TL54 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43aQ3TL54 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43aQ3TL54 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43aQ3TL54 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43aQ3TL54 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43aQ3TL54 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43aQ3TL54 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim43aQ3TL54 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Trim43aQ3TL54 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trim43aQ3TL54 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim43aQ3TL54 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim43aQ3TL54 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms