Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Msh3P13705 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Msh3P13705 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Msh3P13705 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Msh3P13705 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Msh3P13705 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Msh3P13705 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC21.81■■□□□ 1.08
Msh3P13705 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Msh3P13705 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Msh3P13705 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Msh3P13705 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Msh3P13705 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Msh3P13705 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Msh3P13705 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
Msh3P13705 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Msh3P13705 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Msh3P13705 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC21.8■■□□□ 1.08
Msh3P13705 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Msh3P13705 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Msh3P13705 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Msh3P13705 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Msh3P13705 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Msh3P13705 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.8■■□□□ 1.08
Msh3P13705 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Msh3P13705 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Msh3P13705 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Msh3P13705 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.8■■□□□ 1.08
Msh3P13705 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Msh3P13705 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Msh3P13705 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Msh3P13705 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Msh3P13705 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Msh3P13705 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Msh3P13705 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Msh3P13705 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Msh3P13705 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Msh3P13705 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Msh3P13705 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
Msh3P13705 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
Msh3P13705 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC21.78■■□□□ 1.08
Msh3P13705 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.78■■□□□ 1.08
Msh3P13705 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Msh3P13705 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Msh3P13705 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC21.78■■□□□ 1.08
Msh3P13705 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.78■■□□□ 1.08
Msh3P13705 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Msh3P13705 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Msh3P13705 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Msh3P13705 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Msh3P13705 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Msh3P13705 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Msh3P13705 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC21.77■■□□□ 1.08
Msh3P13705 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Msh3P13705 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Msh3P13705 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Msh3P13705 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.77■■□□□ 1.07
Msh3P13705 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Msh3P13705 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Msh3P13705 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC21.76■■□□□ 1.07
Msh3P13705 Serp2-204ENSMUST00000228055 705 ntBASIC21.76■■□□□ 1.07
Msh3P13705 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Msh3P13705 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Msh3P13705 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Msh3P13705 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Msh3P13705 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Msh3P13705 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Msh3P13705 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Msh3P13705 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Msh3P13705 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Msh3P13705 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Msh3P13705 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Msh3P13705 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Msh3P13705 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Msh3P13705 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Msh3P13705 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Msh3P13705 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Msh3P13705 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Msh3P13705 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Msh3P13705 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Msh3P13705 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Msh3P13705 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Msh3P13705 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
Msh3P13705 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Msh3P13705 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Msh3P13705 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC21.74■■□□□ 1.07
Msh3P13705 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Msh3P13705 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Msh3P13705 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Msh3P13705 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.74■■□□□ 1.07
Msh3P13705 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Msh3P13705 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Msh3P13705 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Msh3P13705 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Msh3P13705 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Msh3P13705 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.73■■□□□ 1.07
Msh3P13705 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Msh3P13705 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Msh3P13705 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Msh3P13705 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Msh3P13705 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.73■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 511.3 ms