Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
Rtl3Q6P1Y1 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Rtl3Q6P1Y1 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rtl3Q6P1Y1 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Rtl3Q6P1Y1 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.49■□□□□ 0.87
Rtl3Q6P1Y1 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
Rtl3Q6P1Y1 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rtl3Q6P1Y1 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Rtl3Q6P1Y1 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rtl3Q6P1Y1 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
Rtl3Q6P1Y1 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rtl3Q6P1Y1 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rtl3Q6P1Y1 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rtl3Q6P1Y1 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Gm21168-201ENSMUST00000199646 1096 ntBASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Spcs1-204ENSMUST00000226782 949 ntBASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Rtl3Q6P1Y1 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rtl3Q6P1Y1 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.87
Rtl3Q6P1Y1 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Gm8493-201ENSMUST00000196881 489 ntBASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rtl3Q6P1Y1 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rtl3Q6P1Y1 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rtl3Q6P1Y1 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC20.43■□□□□ 0.86
Rtl3Q6P1Y1 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rtl3Q6P1Y1 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rtl3Q6P1Y1 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rtl3Q6P1Y1 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rtl3Q6P1Y1 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Rtl3Q6P1Y1 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rtl3Q6P1Y1 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rtl3Q6P1Y1 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rtl3Q6P1Y1 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC20.42■□□□□ 0.86
Rtl3Q6P1Y1 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Rtl3Q6P1Y1 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Gm43017-201ENSMUST00000198296 752 ntBASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Wdr70-203ENSMUST00000227371 1130 ntBASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.41■□□□□ 0.86
Rtl3Q6P1Y1 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Rtl3Q6P1Y1 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rtl3Q6P1Y1 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.4■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 94.7 ms