Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Col17a1Q07563 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC31.45■■■□□ 2.62
Col17a1Q07563 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Col17a1Q07563 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
Col17a1Q07563 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.44■■■□□ 2.62
Col17a1Q07563 Mir1199-201ENSMUST00000117015 119 ntBASIC31.44■■■□□ 2.62
Col17a1Q07563 Gm20472-201ENSMUST00000174403 1240 ntBASIC31.44■■■□□ 2.62
Col17a1Q07563 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
Col17a1Q07563 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
Col17a1Q07563 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
Col17a1Q07563 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Col17a1Q07563 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
Col17a1Q07563 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Col17a1Q07563 Gm6728-201ENSMUST00000178117 1065 ntBASIC31.43■■■□□ 2.62
Col17a1Q07563 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC31.43■■■□□ 2.62
Col17a1Q07563 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
Col17a1Q07563 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
Col17a1Q07563 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC31.42■■■□□ 2.62
Col17a1Q07563 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC31.42■■■□□ 2.62
Col17a1Q07563 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
Col17a1Q07563 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC31.42■■■□□ 2.62
Col17a1Q07563 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
Col17a1Q07563 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
Col17a1Q07563 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Col17a1Q07563 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
Col17a1Q07563 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Col17a1Q07563 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC31.41■■■□□ 2.62
Col17a1Q07563 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
Col17a1Q07563 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Col17a1Q07563 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Col17a1Q07563 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Col17a1Q07563 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC31.4■■■□□ 2.62
Col17a1Q07563 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC31.4■■■□□ 2.62
Col17a1Q07563 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC31.4■■■□□ 2.62
Col17a1Q07563 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC31.4■■■□□ 2.62
Col17a1Q07563 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Col17a1Q07563 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
Col17a1Q07563 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
Col17a1Q07563 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Col17a1Q07563 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Col17a1Q07563 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Col17a1Q07563 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
Col17a1Q07563 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
Col17a1Q07563 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
Col17a1Q07563 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
Col17a1Q07563 Gm13534-201ENSMUST00000121169 513 ntBASIC31.39■■■□□ 2.62
Col17a1Q07563 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Col17a1Q07563 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
Col17a1Q07563 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Col17a1Q07563 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Col17a1Q07563 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC31.38■■■□□ 2.61
Col17a1Q07563 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
Col17a1Q07563 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
Col17a1Q07563 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
Col17a1Q07563 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC31.37■■■□□ 2.61
Col17a1Q07563 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Col17a1Q07563 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Col17a1Q07563 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Col17a1Q07563 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
Col17a1Q07563 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
Col17a1Q07563 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Col17a1Q07563 Gm6934-201ENSMUST00000194780 1905 ntBASIC31.36■■■□□ 2.61
Col17a1Q07563 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Col17a1Q07563 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Col17a1Q07563 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Col17a1Q07563 Gm42699-201ENSMUST00000198104 1657 ntBASIC31.35■■■□□ 2.61
Col17a1Q07563 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
Col17a1Q07563 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Col17a1Q07563 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Col17a1Q07563 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC31.35■■■□□ 2.61
Col17a1Q07563 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
Col17a1Q07563 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC31.34■■■□□ 2.61
Col17a1Q07563 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Col17a1Q07563 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC31.33■■■□□ 2.61
Col17a1Q07563 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
Col17a1Q07563 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC31.33■■■□□ 2.61
Col17a1Q07563 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Col17a1Q07563 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Col17a1Q07563 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Col17a1Q07563 CT030146.1-201ENSMUST00000220919 217 ntBASIC31.33■■■□□ 2.61
Col17a1Q07563 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Col17a1Q07563 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Col17a1Q07563 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Col17a1Q07563 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC31.32■■■□□ 2.6
Col17a1Q07563 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
Col17a1Q07563 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Col17a1Q07563 Gm10571-201ENSMUST00000097869 1638 ntBASIC31.31■■■□□ 2.6
Col17a1Q07563 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
Col17a1Q07563 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Col17a1Q07563 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
Col17a1Q07563 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC31.31■■■□□ 2.6
Col17a1Q07563 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Col17a1Q07563 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
Col17a1Q07563 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Col17a1Q07563 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
Col17a1Q07563 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC31.31■■■□□ 2.6
Col17a1Q07563 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
Col17a1Q07563 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Col17a1Q07563 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
Col17a1Q07563 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms