Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps28Q9D1C8 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Vps28Q9D1C8 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Vps28Q9D1C8 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps28Q9D1C8 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Vps28Q9D1C8 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Vps28Q9D1C8 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Vps28Q9D1C8 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps28Q9D1C8 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps28Q9D1C8 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Mir6236-201ENSMUST00000184437 123 ntBASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Gm6139-201ENSMUST00000079261 882 ntBASIC20.36■□□□□ 0.85
Vps28Q9D1C8 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps28Q9D1C8 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC20.35■□□□□ 0.85
Vps28Q9D1C8 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Vps28Q9D1C8 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps28Q9D1C8 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Vps28Q9D1C8 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps28Q9D1C8 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC20.33■□□□□ 0.85
Vps28Q9D1C8 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps28Q9D1C8 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.33■□□□□ 0.85
Vps28Q9D1C8 Gm8493-201ENSMUST00000196881 489 ntBASIC20.33■□□□□ 0.85
Vps28Q9D1C8 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps28Q9D1C8 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Vps28Q9D1C8 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps28Q9D1C8 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps28Q9D1C8 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
Vps28Q9D1C8 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps28Q9D1C8 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Vps28Q9D1C8 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Vps28Q9D1C8 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.32■□□□□ 0.84
Vps28Q9D1C8 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps28Q9D1C8 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps28Q9D1C8 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps28Q9D1C8 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps28Q9D1C8 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps28Q9D1C8 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps28Q9D1C8 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps28Q9D1C8 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps28Q9D1C8 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Vps28Q9D1C8 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC20.31■□□□□ 0.84
Vps28Q9D1C8 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Vps28Q9D1C8 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps28Q9D1C8 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.31■□□□□ 0.84
Vps28Q9D1C8 Serp2-204ENSMUST00000228055 705 ntBASIC20.31■□□□□ 0.84
Vps28Q9D1C8 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps28Q9D1C8 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps28Q9D1C8 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Vps28Q9D1C8 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.31■□□□□ 0.84
Vps28Q9D1C8 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.3■□□□□ 0.84
Vps28Q9D1C8 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Vps28Q9D1C8 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.3■□□□□ 0.84
Vps28Q9D1C8 Gm12251-201ENSMUST00000117893 792 ntBASIC20.3■□□□□ 0.84
Vps28Q9D1C8 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC20.3■□□□□ 0.84
Vps28Q9D1C8 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Vps28Q9D1C8 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps28Q9D1C8 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps28Q9D1C8 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Vps28Q9D1C8 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Vps28Q9D1C8 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms