Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
Sh3rf1Q69ZI1 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sh3rf1Q69ZI1 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sh3rf1Q69ZI1 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sh3rf1Q69ZI1 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sh3rf1Q69ZI1 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Sh3rf1Q69ZI1 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Sh3rf1Q69ZI1 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Sh3rf1Q69ZI1 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sh3rf1Q69ZI1 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC20.14■□□□□ 0.81
Sh3rf1Q69ZI1 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.14■□□□□ 0.81
Sh3rf1Q69ZI1 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sh3rf1Q69ZI1 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sh3rf1Q69ZI1 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sh3rf1Q69ZI1 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sh3rf1Q69ZI1 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Sh3rf1Q69ZI1 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sh3rf1Q69ZI1 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.13■□□□□ 0.81
Sh3rf1Q69ZI1 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sh3rf1Q69ZI1 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC20.13■□□□□ 0.81
Sh3rf1Q69ZI1 AC116713.1-201ENSMUST00000215074 430 ntBASIC20.13■□□□□ 0.81
Sh3rf1Q69ZI1 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.13■□□□□ 0.81
Sh3rf1Q69ZI1 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Sh3rf1Q69ZI1 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sh3rf1Q69ZI1 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sh3rf1Q69ZI1 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sh3rf1Q69ZI1 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.12■□□□□ 0.81
Sh3rf1Q69ZI1 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sh3rf1Q69ZI1 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Sh3rf1Q69ZI1 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
Sh3rf1Q69ZI1 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sh3rf1Q69ZI1 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sh3rf1Q69ZI1 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sh3rf1Q69ZI1 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.11■□□□□ 0.81
Sh3rf1Q69ZI1 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.11■□□□□ 0.81
Sh3rf1Q69ZI1 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sh3rf1Q69ZI1 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sh3rf1Q69ZI1 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Sh3rf1Q69ZI1 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf1Q69ZI1 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf1Q69ZI1 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf1Q69ZI1 Gm12922-201ENSMUST00000120626 809 ntBASIC20.1■□□□□ 0.81
Sh3rf1Q69ZI1 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
Sh3rf1Q69ZI1 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf1Q69ZI1 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf1Q69ZI1 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf1Q69ZI1 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Sh3rf1Q69ZI1 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sh3rf1Q69ZI1 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Sh3rf1Q69ZI1 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sh3rf1Q69ZI1 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC20.09■□□□□ 0.81
Sh3rf1Q69ZI1 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf1Q69ZI1 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf1Q69ZI1 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf1Q69ZI1 Gm10620-201ENSMUST00000098379 1332 ntBASIC20.08■□□□□ 0.81
Sh3rf1Q69ZI1 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf1Q69ZI1 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf1Q69ZI1 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf1Q69ZI1 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
Sh3rf1Q69ZI1 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sh3rf1Q69ZI1 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.08■□□□□ 0.8
Sh3rf1Q69ZI1 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.08■□□□□ 0.8
Sh3rf1Q69ZI1 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Sh3rf1Q69ZI1 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Sh3rf1Q69ZI1 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Sh3rf1Q69ZI1 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf1Q69ZI1 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf1Q69ZI1 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf1Q69ZI1 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20.06■□□□□ 0.8
Sh3rf1Q69ZI1 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf1Q69ZI1 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC20.06■□□□□ 0.8
Sh3rf1Q69ZI1 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf1Q69ZI1 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf1Q69ZI1 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf1Q69ZI1 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 108.6 ms