Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC31.62■■■□□ 2.65
Col17a1Q07563 Rab3c-203ENSMUST00000224180 967 ntBASIC31.62■■■□□ 2.65
Col17a1Q07563 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Col17a1Q07563 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
Col17a1Q07563 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC31.61■■■□□ 2.65
Col17a1Q07563 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Col17a1Q07563 AC154649.1-201ENSMUST00000227392 384 ntBASIC31.61■■■□□ 2.65
Col17a1Q07563 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Col17a1Q07563 Gm10655-201ENSMUST00000098658 1397 ntBASIC31.6■■■□□ 2.65
Col17a1Q07563 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Col17a1Q07563 CT010467.1-202ENSMUST00000205406 714 ntBASIC31.6■■■□□ 2.65
Col17a1Q07563 Gm18101-201ENSMUST00000215769 548 ntBASIC31.6■■■□□ 2.65
Col17a1Q07563 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC31.6■■■□□ 2.65
Col17a1Q07563 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC31.6■■■□□ 2.65
Col17a1Q07563 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC31.59■■■□□ 2.65
Col17a1Q07563 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC31.59■■■□□ 2.65
Col17a1Q07563 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC31.59■■■□□ 2.65
Col17a1Q07563 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC31.59■■■□□ 2.65
Col17a1Q07563 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
Col17a1Q07563 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Col17a1Q07563 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Col17a1Q07563 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Col17a1Q07563 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Col17a1Q07563 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Col17a1Q07563 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
Col17a1Q07563 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Col17a1Q07563 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Col17a1Q07563 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC31.56■■■□□ 2.64
Col17a1Q07563 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Col17a1Q07563 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Col17a1Q07563 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC31.56■■■□□ 2.64
Col17a1Q07563 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Col17a1Q07563 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC31.55■■■□□ 2.64
Col17a1Q07563 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Col17a1Q07563 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Col17a1Q07563 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC31.55■■■□□ 2.64
Col17a1Q07563 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC31.55■■■□□ 2.64
Col17a1Q07563 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Col17a1Q07563 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Col17a1Q07563 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC31.54■■■□□ 2.64
Col17a1Q07563 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC31.54■■■□□ 2.64
Col17a1Q07563 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
Col17a1Q07563 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC31.53■■■□□ 2.64
Col17a1Q07563 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC31.53■■■□□ 2.64
Col17a1Q07563 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC31.53■■■□□ 2.64
Col17a1Q07563 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC31.53■■■□□ 2.64
Col17a1Q07563 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Col17a1Q07563 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Col17a1Q07563 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC31.53■■■□□ 2.64
Col17a1Q07563 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC31.52■■■□□ 2.64
Col17a1Q07563 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Col17a1Q07563 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Col17a1Q07563 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC31.52■■■□□ 2.64
Col17a1Q07563 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Col17a1Q07563 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Col17a1Q07563 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Col17a1Q07563 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC31.52■■■□□ 2.64
Col17a1Q07563 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Col17a1Q07563 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
Col17a1Q07563 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC31.51■■■□□ 2.64
Col17a1Q07563 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC31.51■■■□□ 2.63
Col17a1Q07563 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.63
Col17a1Q07563 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC31.51■■■□□ 2.63
Col17a1Q07563 Gm11249-201ENSMUST00000117071 859 ntBASIC31.51■■■□□ 2.63
Col17a1Q07563 Gm6433-201ENSMUST00000118634 875 ntBASIC31.51■■■□□ 2.63
Col17a1Q07563 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC31.51■■■□□ 2.63
Col17a1Q07563 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Col17a1Q07563 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
Col17a1Q07563 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Col17a1Q07563 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Col17a1Q07563 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Col17a1Q07563 Gm12896-201ENSMUST00000118430 226 ntBASIC31.49■■■□□ 2.63
Col17a1Q07563 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC31.49■■■□□ 2.63
Col17a1Q07563 Gm43799-201ENSMUST00000201845 579 ntBASIC31.49■■■□□ 2.63
Col17a1Q07563 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Col17a1Q07563 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Col17a1Q07563 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
Col17a1Q07563 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Col17a1Q07563 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC31.48■■■□□ 2.63
Col17a1Q07563 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Col17a1Q07563 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
Col17a1Q07563 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Col17a1Q07563 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
Col17a1Q07563 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Col17a1Q07563 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC31.47■■■□□ 2.63
Col17a1Q07563 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Col17a1Q07563 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Col17a1Q07563 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Col17a1Q07563 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Col17a1Q07563 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC31.46■■■□□ 2.63
Col17a1Q07563 Gm10698-201ENSMUST00000182663 604 ntBASIC31.46■■■□□ 2.63
Col17a1Q07563 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Col17a1Q07563 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Col17a1Q07563 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Col17a1Q07563 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Col17a1Q07563 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Col17a1Q07563 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Col17a1Q07563 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
Col17a1Q07563 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Col17a1Q07563 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC31.46■■■□□ 2.63
Retrieved 100 of 76,532 protein–RNA pairs in 977.2 ms