Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps28Q9D1C8 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.48■□□□□ 0.87
Vps28Q9D1C8 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps28Q9D1C8 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.48■□□□□ 0.87
Vps28Q9D1C8 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.48■□□□□ 0.87
Vps28Q9D1C8 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Vps28Q9D1C8 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps28Q9D1C8 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.47■□□□□ 0.87
Vps28Q9D1C8 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps28Q9D1C8 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps28Q9D1C8 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Vps28Q9D1C8 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Vps28Q9D1C8 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps28Q9D1C8 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps28Q9D1C8 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.47■□□□□ 0.87
Vps28Q9D1C8 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.47■□□□□ 0.87
Vps28Q9D1C8 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Vps28Q9D1C8 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps28Q9D1C8 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps28Q9D1C8 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps28Q9D1C8 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps28Q9D1C8 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps28Q9D1C8 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps28Q9D1C8 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Vps28Q9D1C8 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps28Q9D1C8 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Vps28Q9D1C8 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.46■□□□□ 0.87
Vps28Q9D1C8 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Vps28Q9D1C8 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Vps28Q9D1C8 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps28Q9D1C8 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps28Q9D1C8 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps28Q9D1C8 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps28Q9D1C8 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps28Q9D1C8 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps28Q9D1C8 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps28Q9D1C8 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Vps28Q9D1C8 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC20.45■□□□□ 0.86
Vps28Q9D1C8 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps28Q9D1C8 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps28Q9D1C8 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Vps28Q9D1C8 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps28Q9D1C8 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps28Q9D1C8 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps28Q9D1C8 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps28Q9D1C8 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps28Q9D1C8 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps28Q9D1C8 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps28Q9D1C8 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps28Q9D1C8 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.44■□□□□ 0.86
Vps28Q9D1C8 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps28Q9D1C8 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps28Q9D1C8 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
Vps28Q9D1C8 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps28Q9D1C8 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.42■□□□□ 0.86
Vps28Q9D1C8 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps28Q9D1C8 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20.42■□□□□ 0.86
Vps28Q9D1C8 Mir7075-201ENSMUST00000184187 82 ntBASIC20.42■□□□□ 0.86
Vps28Q9D1C8 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC20.42■□□□□ 0.86
Vps28Q9D1C8 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps28Q9D1C8 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
Vps28Q9D1C8 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps28Q9D1C8 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Vps28Q9D1C8 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps28Q9D1C8 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.41■□□□□ 0.86
Vps28Q9D1C8 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Vps28Q9D1C8 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Vps28Q9D1C8 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC20.41■□□□□ 0.86
Vps28Q9D1C8 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Vps28Q9D1C8 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps28Q9D1C8 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps28Q9D1C8 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps28Q9D1C8 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps28Q9D1C8 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Vps28Q9D1C8 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.4■□□□□ 0.86
Vps28Q9D1C8 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Vps28Q9D1C8 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.4■□□□□ 0.86
Vps28Q9D1C8 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.4■□□□□ 0.86
Vps28Q9D1C8 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps28Q9D1C8 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps28Q9D1C8 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Vps28Q9D1C8 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Vps28Q9D1C8 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Vps28Q9D1C8 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps28Q9D1C8 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps28Q9D1C8 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps28Q9D1C8 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps28Q9D1C8 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 117.7 ms