Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trav6-3Q5R1E6 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav6-3Q5R1E6 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trav6-3Q5R1E6 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC16.09■□□□□ 0.17
Trav6-3Q5R1E6 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trav6-3Q5R1E6 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trav6-3Q5R1E6 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav6-3Q5R1E6 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC16.08■□□□□ 0.16
Trav6-3Q5R1E6 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav6-3Q5R1E6 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav6-3Q5R1E6 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav6-3Q5R1E6 Gm43909-201ENSMUST00000203443 1876 ntBASIC16.08■□□□□ 0.16
Trav6-3Q5R1E6 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6-3Q5R1E6 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Trav6-3Q5R1E6 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6-3Q5R1E6 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6-3Q5R1E6 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6-3Q5R1E6 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6-3Q5R1E6 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6-3Q5R1E6 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC16.06■□□□□ 0.16
Trav6-3Q5R1E6 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6-3Q5R1E6 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Trav6-3Q5R1E6 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
Trav6-3Q5R1E6 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Gm18755-201ENSMUST00000218030 1099 ntBASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6-3Q5R1E6 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6-3Q5R1E6 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6-3Q5R1E6 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6-3Q5R1E6 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6-3Q5R1E6 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6-3Q5R1E6 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6-3Q5R1E6 Golph3-202ENSMUST00000226517 2359 ntBASIC16.04■□□□□ 0.16
Trav6-3Q5R1E6 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6-3Q5R1E6 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6-3Q5R1E6 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC16.04■□□□□ 0.16
Trav6-3Q5R1E6 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6-3Q5R1E6 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Trav6-3Q5R1E6 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC16.03■□□□□ 0.16
Trav6-3Q5R1E6 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6-3Q5R1E6 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6-3Q5R1E6 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6-3Q5R1E6 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6-3Q5R1E6 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6-3Q5R1E6 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6-3Q5R1E6 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6-3Q5R1E6 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6-3Q5R1E6 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6-3Q5R1E6 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Trav6-3Q5R1E6 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6-3Q5R1E6 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6-3Q5R1E6 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC16.02■□□□□ 0.16
Trav6-3Q5R1E6 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6-3Q5R1E6 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Trav6-3Q5R1E6 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6-3Q5R1E6 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6-3Q5R1E6 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6-3Q5R1E6 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC16.02■□□□□ 0.16
Trav6-3Q5R1E6 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Trav6-3Q5R1E6 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Trav6-3Q5R1E6 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav6-3Q5R1E6 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav6-3Q5R1E6 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav6-3Q5R1E6 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav6-3Q5R1E6 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC16.02■□□□□ 0.15
Trav6-3Q5R1E6 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC16.02■□□□□ 0.15
Trav6-3Q5R1E6 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Trav6-3Q5R1E6 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC16.01■□□□□ 0.15
Trav6-3Q5R1E6 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms