Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Mipep-204ENSMUST00000225043 1548 ntBASIC26.66■■□□□ 1.86
Shroom3Q9QXN0 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Shroom3Q9QXN0 Gm2415-204ENSMUST00000190235 2004 ntBASIC26.65■■□□□ 1.86
Shroom3Q9QXN0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC26.64■■□□□ 1.85
Shroom3Q9QXN0 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Shroom3Q9QXN0 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Shroom3Q9QXN0 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC26.6■■□□□ 1.85
Shroom3Q9QXN0 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
Shroom3Q9QXN0 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Shroom3Q9QXN0 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC26.58■■□□□ 1.85
Shroom3Q9QXN0 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Shroom3Q9QXN0 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Shroom3Q9QXN0 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Shroom3Q9QXN0 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
Shroom3Q9QXN0 AC166822.3-201ENSMUST00000227394 661 ntBASIC26.52■■□□□ 1.84
Shroom3Q9QXN0 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Shroom3Q9QXN0 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC26.5■■□□□ 1.83
Shroom3Q9QXN0 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Shroom3Q9QXN0 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Shroom3Q9QXN0 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Shroom3Q9QXN0 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
Shroom3Q9QXN0 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
Shroom3Q9QXN0 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
Shroom3Q9QXN0 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Shroom3Q9QXN0 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Shroom3Q9QXN0 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Shroom3Q9QXN0 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Shroom3Q9QXN0 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Shroom3Q9QXN0 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Shroom3Q9QXN0 Gm6658-202ENSMUST00000209493 1885 ntBASIC26.3■■□□□ 1.8
Shroom3Q9QXN0 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Shroom3Q9QXN0 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Shroom3Q9QXN0 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
Shroom3Q9QXN0 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Shroom3Q9QXN0 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC26.26■■□□□ 1.79
Shroom3Q9QXN0 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
Shroom3Q9QXN0 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC26.24■■□□□ 1.79
Shroom3Q9QXN0 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Shroom3Q9QXN0 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Shroom3Q9QXN0 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC26.23■■□□□ 1.79
Shroom3Q9QXN0 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Shroom3Q9QXN0 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Shroom3Q9QXN0 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
Shroom3Q9QXN0 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Shroom3Q9QXN0 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Shroom3Q9QXN0 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Shroom3Q9QXN0 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC26.18■■□□□ 1.78
Shroom3Q9QXN0 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Shroom3Q9QXN0 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Shroom3Q9QXN0 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Shroom3Q9QXN0 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Shroom3Q9QXN0 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
Shroom3Q9QXN0 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Shroom3Q9QXN0 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC26.12■■□□□ 1.77
Shroom3Q9QXN0 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Shroom3Q9QXN0 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Shroom3Q9QXN0 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
Shroom3Q9QXN0 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Shroom3Q9QXN0 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Shroom3Q9QXN0 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Shroom3Q9QXN0 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC26.07■■□□□ 1.76
Shroom3Q9QXN0 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Shroom3Q9QXN0 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Shroom3Q9QXN0 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Shroom3Q9QXN0 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Shroom3Q9QXN0 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Shroom3Q9QXN0 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Shroom3Q9QXN0 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC26■■□□□ 1.75
Shroom3Q9QXN0 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC26■■□□□ 1.75
Shroom3Q9QXN0 Gm16148-201ENSMUST00000119653 893 ntBASIC25.99■■□□□ 1.75
Shroom3Q9QXN0 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
Shroom3Q9QXN0 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
Shroom3Q9QXN0 Peli2-204ENSMUST00000226513 1320 ntBASIC25.97■■□□□ 1.75
Shroom3Q9QXN0 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC25.96■■□□□ 1.75
Shroom3Q9QXN0 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC25.95■■□□□ 1.75
Shroom3Q9QXN0 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
Shroom3Q9QXN0 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
Shroom3Q9QXN0 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
Shroom3Q9QXN0 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC25.91■■□□□ 1.74
Shroom3Q9QXN0 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Shroom3Q9QXN0 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
Shroom3Q9QXN0 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Shroom3Q9QXN0 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Shroom3Q9QXN0 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC25.86■■□□□ 1.73
Shroom3Q9QXN0 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Shroom3Q9QXN0 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Shroom3Q9QXN0 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
Shroom3Q9QXN0 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Shroom3Q9QXN0 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
Shroom3Q9QXN0 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Shroom3Q9QXN0 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.72
Shroom3Q9QXN0 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC25.82■■□□□ 1.72
Shroom3Q9QXN0 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Shroom3Q9QXN0 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC25.81■■□□□ 1.72
Shroom3Q9QXN0 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
Shroom3Q9QXN0 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC25.8■■□□□ 1.72
Shroom3Q9QXN0 Tdp2-203ENSMUST00000223804 1136 ntBASIC25.8■■□□□ 1.72
Shroom3Q9QXN0 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Shroom3Q9QXN0 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Shroom3Q9QXN0 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Retrieved 100 of 76,532 protein–RNA pairs in 63.2 ms