Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Smco4Q9JIS3 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Smco4Q9JIS3 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Smco4Q9JIS3 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Smco4Q9JIS3 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smco4Q9JIS3 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smco4Q9JIS3 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Smco4Q9JIS3 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Smco4Q9JIS3 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Smco4Q9JIS3 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Smco4Q9JIS3 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Smco4Q9JIS3 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Smco4Q9JIS3 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Smco4Q9JIS3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Smco4Q9JIS3 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Smco4Q9JIS3 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Smco4Q9JIS3 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
Smco4Q9JIS3 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
Smco4Q9JIS3 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smco4Q9JIS3 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Smco4Q9JIS3 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Smco4Q9JIS3 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Smco4Q9JIS3 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Smco4Q9JIS3 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Smco4Q9JIS3 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Smco4Q9JIS3 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Smco4Q9JIS3 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Smco4Q9JIS3 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Smco4Q9JIS3 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.75■□□□□ 0.91
Smco4Q9JIS3 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smco4Q9JIS3 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smco4Q9JIS3 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smco4Q9JIS3 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smco4Q9JIS3 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smco4Q9JIS3 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Smco4Q9JIS3 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smco4Q9JIS3 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smco4Q9JIS3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smco4Q9JIS3 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smco4Q9JIS3 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smco4Q9JIS3 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smco4Q9JIS3 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.61■□□□□ 0.89
Smco4Q9JIS3 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smco4Q9JIS3 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smco4Q9JIS3 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Smco4Q9JIS3 Amer2-203ENSMUST00000225247 2662 ntBASIC20.58■□□□□ 0.89
Smco4Q9JIS3 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Smco4Q9JIS3 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Smco4Q9JIS3 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.57■□□□□ 0.88
Smco4Q9JIS3 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smco4Q9JIS3 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Smco4Q9JIS3 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Smco4Q9JIS3 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smco4Q9JIS3 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smco4Q9JIS3 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Smco4Q9JIS3 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smco4Q9JIS3 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smco4Q9JIS3 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smco4Q9JIS3 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smco4Q9JIS3 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Smco4Q9JIS3 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smco4Q9JIS3 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Smco4Q9JIS3 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Smco4Q9JIS3 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Smco4Q9JIS3 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smco4Q9JIS3 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.47■□□□□ 0.87
Smco4Q9JIS3 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Smco4Q9JIS3 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Smco4Q9JIS3 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smco4Q9JIS3 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Smco4Q9JIS3 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Smco4Q9JIS3 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Smco4Q9JIS3 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Smco4Q9JIS3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Smco4Q9JIS3 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smco4Q9JIS3 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smco4Q9JIS3 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Smco4Q9JIS3 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smco4Q9JIS3 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Smco4Q9JIS3 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC20.43■□□□□ 0.86
Smco4Q9JIS3 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Smco4Q9JIS3 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Smco4Q9JIS3 Gm24109-201ENSMUST00000175489 103 ntBASIC20.42■□□□□ 0.86
Smco4Q9JIS3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smco4Q9JIS3 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smco4Q9JIS3 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smco4Q9JIS3 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
Smco4Q9JIS3 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Smco4Q9JIS3 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Smco4Q9JIS3 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Smco4Q9JIS3 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Smco4Q9JIS3 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC20.37■□□□□ 0.85
Smco4Q9JIS3 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smco4Q9JIS3 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Smco4Q9JIS3 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
Smco4Q9JIS3 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smco4Q9JIS3 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Smco4Q9JIS3 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Smco4Q9JIS3 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smco4Q9JIS3 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms