Protein–RNA interactions for Protein: Q8K4Z5

Sf3a1, Splicing factor 3A subunit 1, mousemouse

Known RBP Predictions only

Length 791 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3a1Q8K4Z5 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
Sf3a1Q8K4Z5 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Sf3a1Q8K4Z5 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC32.12■■■□□ 2.73
Sf3a1Q8K4Z5 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
Sf3a1Q8K4Z5 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
Sf3a1Q8K4Z5 Gm24804-201ENSMUST00000174982 85 ntBASIC32.11■■■□□ 2.73
Sf3a1Q8K4Z5 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Sf3a1Q8K4Z5 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC32.07■■■□□ 2.72
Sf3a1Q8K4Z5 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC32.07■■■□□ 2.72
Sf3a1Q8K4Z5 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
Sf3a1Q8K4Z5 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
Sf3a1Q8K4Z5 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC32■■■□□ 2.71
Sf3a1Q8K4Z5 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC31.98■■■□□ 2.71
Sf3a1Q8K4Z5 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.97■■■□□ 2.71
Sf3a1Q8K4Z5 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Sf3a1Q8K4Z5 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.95■■■□□ 2.71
Sf3a1Q8K4Z5 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Sf3a1Q8K4Z5 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC31.94■■■□□ 2.7
Sf3a1Q8K4Z5 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Sf3a1Q8K4Z5 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Sf3a1Q8K4Z5 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Sf3a1Q8K4Z5 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31.88■■■□□ 2.69
Sf3a1Q8K4Z5 Peli2-204ENSMUST00000226513 1320 ntBASIC31.88■■■□□ 2.69
Sf3a1Q8K4Z5 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Sf3a1Q8K4Z5 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Sf3a1Q8K4Z5 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Sf3a1Q8K4Z5 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Sf3a1Q8K4Z5 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Sf3a1Q8K4Z5 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Sf3a1Q8K4Z5 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Sf3a1Q8K4Z5 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
Sf3a1Q8K4Z5 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
Sf3a1Q8K4Z5 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Sf3a1Q8K4Z5 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC31.79■■■□□ 2.68
Sf3a1Q8K4Z5 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
Sf3a1Q8K4Z5 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC31.77■■■□□ 2.68
Sf3a1Q8K4Z5 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Sf3a1Q8K4Z5 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Sf3a1Q8K4Z5 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC31.74■■■□□ 2.67
Sf3a1Q8K4Z5 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC31.73■■■□□ 2.67
Sf3a1Q8K4Z5 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC31.73■■■□□ 2.67
Sf3a1Q8K4Z5 Gm6658-202ENSMUST00000209493 1885 ntBASIC31.72■■■□□ 2.67
Sf3a1Q8K4Z5 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
Sf3a1Q8K4Z5 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
Sf3a1Q8K4Z5 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Sf3a1Q8K4Z5 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
Sf3a1Q8K4Z5 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Sf3a1Q8K4Z5 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Sf3a1Q8K4Z5 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC31.61■■■□□ 2.65
Sf3a1Q8K4Z5 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC31.61■■■□□ 2.65
Sf3a1Q8K4Z5 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Sf3a1Q8K4Z5 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Sf3a1Q8K4Z5 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Sf3a1Q8K4Z5 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
Sf3a1Q8K4Z5 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Sf3a1Q8K4Z5 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC31.5■■■□□ 2.63
Sf3a1Q8K4Z5 Gm16148-201ENSMUST00000119653 893 ntBASIC31.49■■■□□ 2.63
Sf3a1Q8K4Z5 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Sf3a1Q8K4Z5 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC31.48■■■□□ 2.63
Sf3a1Q8K4Z5 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC31.48■■■□□ 2.63
Sf3a1Q8K4Z5 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC31.48■■■□□ 2.63
Sf3a1Q8K4Z5 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Sf3a1Q8K4Z5 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Sf3a1Q8K4Z5 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Sf3a1Q8K4Z5 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC31.43■■■□□ 2.62
Sf3a1Q8K4Z5 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
Sf3a1Q8K4Z5 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
Sf3a1Q8K4Z5 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
Sf3a1Q8K4Z5 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
Sf3a1Q8K4Z5 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC31.38■■■□□ 2.61
Sf3a1Q8K4Z5 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC31.38■■■□□ 2.61
Sf3a1Q8K4Z5 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Sf3a1Q8K4Z5 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Sf3a1Q8K4Z5 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Sf3a1Q8K4Z5 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Sf3a1Q8K4Z5 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Sf3a1Q8K4Z5 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC31.33■■■□□ 2.61
Sf3a1Q8K4Z5 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
Sf3a1Q8K4Z5 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
Sf3a1Q8K4Z5 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Sf3a1Q8K4Z5 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Sf3a1Q8K4Z5 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Sf3a1Q8K4Z5 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Sf3a1Q8K4Z5 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Sf3a1Q8K4Z5 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Sf3a1Q8K4Z5 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Sf3a1Q8K4Z5 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC31.28■■■□□ 2.6
Sf3a1Q8K4Z5 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
Sf3a1Q8K4Z5 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Sf3a1Q8K4Z5 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
Sf3a1Q8K4Z5 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
Sf3a1Q8K4Z5 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Sf3a1Q8K4Z5 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
Sf3a1Q8K4Z5 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
Sf3a1Q8K4Z5 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC31.23■■■□□ 2.59
Sf3a1Q8K4Z5 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Sf3a1Q8K4Z5 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Sf3a1Q8K4Z5 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC31.19■■■□□ 2.58
Sf3a1Q8K4Z5 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Sf3a1Q8K4Z5 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms