Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Vps53Q8CCB4 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
Vps53Q8CCB4 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Vps53Q8CCB4 AL845457.1-201ENSMUST00000197244 68 ntBASIC30.21■■■□□ 2.43
Vps53Q8CCB4 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
Vps53Q8CCB4 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Vps53Q8CCB4 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
Vps53Q8CCB4 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Vps53Q8CCB4 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC30.13■■■□□ 2.41
Vps53Q8CCB4 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
Vps53Q8CCB4 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Vps53Q8CCB4 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Vps53Q8CCB4 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Vps53Q8CCB4 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Vps53Q8CCB4 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
Vps53Q8CCB4 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Vps53Q8CCB4 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC30.01■■■□□ 2.39
Vps53Q8CCB4 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC30.01■■■□□ 2.39
Vps53Q8CCB4 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
Vps53Q8CCB4 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
Vps53Q8CCB4 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
Vps53Q8CCB4 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Vps53Q8CCB4 Gm2415-204ENSMUST00000190235 2004 ntBASIC29.97■■■□□ 2.39
Vps53Q8CCB4 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC29.96■■■□□ 2.39
Vps53Q8CCB4 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC29.95■■■□□ 2.39
Vps53Q8CCB4 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
Vps53Q8CCB4 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
Vps53Q8CCB4 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
Vps53Q8CCB4 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC29.94■■■□□ 2.38
Vps53Q8CCB4 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC29.92■■■□□ 2.38
Vps53Q8CCB4 Gm16148-201ENSMUST00000119653 893 ntBASIC29.91■■■□□ 2.38
Vps53Q8CCB4 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Vps53Q8CCB4 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC29.89■■■□□ 2.38
Vps53Q8CCB4 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC29.89■■■□□ 2.38
Vps53Q8CCB4 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
Vps53Q8CCB4 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC29.83■■■□□ 2.37
Vps53Q8CCB4 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
Vps53Q8CCB4 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Vps53Q8CCB4 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC29.82■■■□□ 2.36
Vps53Q8CCB4 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
Vps53Q8CCB4 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
Vps53Q8CCB4 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
Vps53Q8CCB4 Gm6658-202ENSMUST00000209493 1885 ntBASIC29.75■■■□□ 2.35
Vps53Q8CCB4 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC29.75■■■□□ 2.35
Vps53Q8CCB4 Mipep-204ENSMUST00000225043 1548 ntBASIC29.74■■■□□ 2.35
Vps53Q8CCB4 Tdp2-203ENSMUST00000223804 1136 ntBASIC29.72■■■□□ 2.35
Vps53Q8CCB4 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Vps53Q8CCB4 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
Vps53Q8CCB4 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Vps53Q8CCB4 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Vps53Q8CCB4 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
Vps53Q8CCB4 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
Vps53Q8CCB4 Peli2-204ENSMUST00000226513 1320 ntBASIC29.65■■■□□ 2.34
Vps53Q8CCB4 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC29.64■■■□□ 2.34
Vps53Q8CCB4 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC29.64■■■□□ 2.33
Vps53Q8CCB4 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
Vps53Q8CCB4 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC29.63■■■□□ 2.33
Vps53Q8CCB4 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
Vps53Q8CCB4 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC29.61■■■□□ 2.33
Vps53Q8CCB4 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC29.61■■■□□ 2.33
Vps53Q8CCB4 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC29.61■■■□□ 2.33
Vps53Q8CCB4 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Vps53Q8CCB4 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Vps53Q8CCB4 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC29.56■■■□□ 2.32
Vps53Q8CCB4 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC29.54■■■□□ 2.32
Vps53Q8CCB4 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Vps53Q8CCB4 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC29.53■■■□□ 2.32
Vps53Q8CCB4 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC29.53■■■□□ 2.32
Vps53Q8CCB4 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Vps53Q8CCB4 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC29.52■■■□□ 2.32
Vps53Q8CCB4 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
Vps53Q8CCB4 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC29.52■■■□□ 2.32
Vps53Q8CCB4 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC29.51■■■□□ 2.31
Vps53Q8CCB4 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC29.47■■■□□ 2.31
Vps53Q8CCB4 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC29.45■■■□□ 2.31
Vps53Q8CCB4 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Vps53Q8CCB4 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC29.44■■■□□ 2.3
Vps53Q8CCB4 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
Vps53Q8CCB4 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC29.41■■■□□ 2.3
Vps53Q8CCB4 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Vps53Q8CCB4 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Vps53Q8CCB4 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
Vps53Q8CCB4 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
Vps53Q8CCB4 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
Vps53Q8CCB4 Gm45855-201ENSMUST00000212546 880 ntBASIC29.33■■■□□ 2.29
Vps53Q8CCB4 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC29.33■■■□□ 2.29
Vps53Q8CCB4 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
Vps53Q8CCB4 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC29.32■■■□□ 2.28
Vps53Q8CCB4 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Vps53Q8CCB4 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC29.29■■■□□ 2.28
Vps53Q8CCB4 AC153504.1-201ENSMUST00000218379 2290 ntBASIC29.29■■■□□ 2.28
Vps53Q8CCB4 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
Vps53Q8CCB4 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Vps53Q8CCB4 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC29.26■■■□□ 2.27
Vps53Q8CCB4 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Vps53Q8CCB4 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC29.25■■■□□ 2.27
Vps53Q8CCB4 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Vps53Q8CCB4 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC29.25■■■□□ 2.27
Vps53Q8CCB4 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC29.24■■■□□ 2.27
Vps53Q8CCB4 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms